References
- Sanger HL, Klotz G, Riesner D, Gross HJ, Kleinschmidt AK. Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures. Proc Natl Acad Sci USA 1976;73:3852-6. https://doi.org/10.1073/pnas.73.11.3852
- Burd CE, Jeck WR, Liu Y, et al. Expression of linear and novel circular forms of an INK4/ARF-associated non-coding RNA correlates with atherosclerosis risk. Plos Genet 2010;6:e1001233. https://doi.org/10.1371/journal.pgen.1001233
- Veno MT, Hansen TB, Veno ST, et al. Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development. Genome Biol 2015;16:245. https://doi.org/10.1186/s13059-015-0801-3
- Cocquerelle C, Mascrez B, Hetuin D, Bailleul B. Mis-splicing yields circular RNA molecules. FASEB J 1993;7:155-60. https://doi.org/10.1096/fasebj.7.1.7678559
- Jeck WR, Sharpless NE. Detecting and characterizing circular RNAs. Nat Biotechnol 2014;32:453-61. https://doi.org/10.1038/nbt.2890
- Memczak S, Jens M, Elefsinioti A, et al. Circular RNAs are a large class of animal RNAs with regulatory potency. Nature 2013;495:333-8. https://doi.org/10.1038/nature11928
- Hansen TB, Jensen TI, Clausen BH, et al. Natural RNA circles function as efficient microRNA sponges. Nature 2013;495:384-8. https://doi.org/10.1038/nature11993
- Zhang Y, Zhang XO, Chen T, et al. Circular intronic long noncoding RNAs. Mol Cell 2013;51:792-806. https://doi.org/10.1016/j.molcel.2013.08.017
- Pamudurti NR, Bartok O, Jens M, et al. Translation of CircRNAs. Mol Cell 2017;66:9-21.e7. https://doi.org/10.1016/j.molcel.2017.02.021
- Legnini I, Di TG, Rossi F, et al. Circ-ZNF609 is a circular RNA that can be translated and functions in myogenesis. Mol Cell 2017;66:22-37.e9. https://doi.org/10.1016/j.molcel.2017.02.017
- Yun Y, Fan X, Mao M, et al. Extensive translation of circular RNAs driven by N6-methyladenosine. Cell Res 2017;27:626-41. https://doi.org/10.1038/cr.2017.31
- Meurens F, Summerfield A, Nauwynck H, Saif L, Gerdts V. The pig: a model for human infectious diseases. Trends Microbiol 2012;20:50-7. https://doi.org/10.1016/j.tim.2011.11.002
- Wu T, Zhang Z, Yuan Z, et al. Distinctive genes determine different intramuscular fat and muscle fiber ratios of the longissimus dorsi muscles in Jinhua and Landrace pigs. Plos One 2013;8:e53181. https://doi.org/10.1371/journal.pone.0053181
- Chen P, Baas TJ, Mabry JW, Koehler KJ. Genetic correlations between lean growth and litter traits in U.S. Yorkshire, Duroc, Hampshire, and Landrace pigs. J Anim Sci 2003;81:1700-5. https://doi.org/10.2527/2003.8171700x
- Jes-Niels B, Nicolas J, Heumuller AW, et al. Identification and characterization of hypoxia-regulated endothelial circular RNA. Circ Res 2015;117:884-90. https://doi.org/10.1161/CIRCRESAHA.115.306319
- Zheng Q, Bao C, Guo W, et al. Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs. Nat Commun 2016;7:11215. https://doi.org/10.1038/ncomms11215
- Mao X, Cai T, Olyarchuk JG, Wei L. Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary. Bioinformatics 2005;21:3787-93. https://doi.org/10.1093/bioinformatics/bti430
- Consortium TR. RNAcentral: an international database of ncRNA sequences. Nucleic Acids Res 2015;43:D123-9. https://doi.org/10.1093/nar/gku991
- Zhang, XiaoOu, Wang, et al. Complementary sequencemediated exon circularization. Cell 2014;159:134-47. https://doi.org/10.1016/j.cell.2014.09.001
- Spurlock ME, Gabler NK. The development of porcine models of obesity and the metabolic syndrome. J Nutr 2008;138:397-402. https://doi.org/10.1093/jn/138.2.397
- Kim YC, Ntambi JM. Regulation of stearoyl-CoA desaturase genes: role in cellular metabolism and preadipocyte differentiation. Biochem Biophys Res Commun 1999;266:1-4. https://doi.org/10.1006/bbrc.1999.1704
- Treutlein J, Cichon S, Ridinger M, et al. Genome-wide association study of alcohol dependence. Arch Gen Psychiatry 2009;66:773-84. https://doi.org/10.1001/archgenpsychiatry.2009.83
- Li Q, Tao Z, Shi L, et al. Expression and genome polymorphism of ACSL1 gene in different pig breeds. Mol Biol Rep 2012;39: 8787-92. https://doi.org/10.1007/s11033-012-1741-6
- Ramos-Valdivia AC, van der Heijden R, Verpoorte R. Isopentenyl diphosphate isomerase: a core enzyme in isoprenoid biosynthesis. A review of its biochemistry and function. Nat Prod Rep 1997;14:591-603. https://doi.org/10.1039/np9971400591
- Romanelli MG, Lorenzi P, Sangalli A, Diani E, Mottes M. Characterization and functional analysis of cis-acting elements of the human farnesyl diphosphate synthetase (FDPS) gene 5′ flanking region. Genomics 2009;93:227-34. https://doi.org/10.1016/j.ygeno.2008.11.002
- Hafner M, Rezen T, Rozman D. Regulation of hepatic cytochromes p450 by lipids and cholesterol. Curr Drug Metab 2011;12: 173-85. https://doi.org/10.2174/138920011795016890
- Filipowicz W, Bhattacharyya SN, Sonenberg N. Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 2008;9:102-14. https://doi.org/10.1038/nrg2290
- Boesch-Saadatmandi C, Wagner AE, Wolffram S, Rimbach G. Effect of quercetin on inflammatory gene expression in mice liver in vivo - role of redox factor 1, miRNA-122 and miRNA- 125b. Pharmacol Res 2012;65:523-30. https://doi.org/10.1016/j.phrs.2012.02.007
- Huang R, Zhang Y, Han B, et al. Circular RNA HIPK2 regulates astrocyte activation via cooperation of autophagy and ER stress by targeting MIR124-2HG. Autophagy 2017;13:1722-41. https://doi.org/10.1080/15548627.2017.1356975
- Esau C, Davis S, Murray SF, et al. miR-122 regulation of lipid metabolism revealed by in vivo antisense targeting. Cell Metab 2006;3:87-98. https://doi.org/10.1016/j.cmet.2006.01.005
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