References
- Hodgkinson CA, Moore KJ, Nakayama A, et al. Mutations at the mouse microphthalmia locus are associated with defects in a gene encoding a novel basic helix-loop-helix-zipper protein. Cell 1993;74:395-404. https://doi.org/10.1016/0092-8674(93)90429-T
- Fuse N, Yasumoto K, Takeda K, et al. Molecular cloning of cDNA encoding a novel microphthalmia-associated transcription factor isoform with a distinct amino terminus. J Biochem 1999;126:1043-51. https://doi.org/10.1093/oxfordjournals.jbchem.a022548
- Li S, Wang C, Yu W, Zhao S, Gong Y. Identification of genes related to white and black plumage formation by RNA-seq from white and black feather bulbs in ducks. PLoS ONE 2012;7:e36592. https://doi.org/10.1371/journal.pone.0036592
- Li Y, Zhu X, Yang L, et al. Deng Expression and network analysis of genes related to melanocyte development in the Silky Fowl and White Leghorn embryos. Mol Biol Rep 2011;38:1433-41. https://doi.org/10.1007/s11033-010-0248-2
- Fontanesi L, Scotti E, Russo V. Haplotype variability in the bovine MITF gene and association with piebaldism in Holstein and Simmental cattle breeds. Anim Genet 2012;43:250-6. https://doi.org/10.1111/j.1365-2052.2011.02242.x
- Karlsson EK, Baranowska I, Wade CM, Salmon HN, Zody MC. Efficient mapping of mendelian traits in dogs through genome-wide association. Nat Genet 2007;39:1321-8.
- Minvielle F, Bed'Hom B, Coville JL, et al. The "silver" Japanese quail and the MITF gene: causal mutation, associated traits and homology with the "blue" chicken plumage. BMC Genet 2010;11:15.
- Jackson I, Chambers D, Tsukamoto K, et al. A second tyrosinaserelated protein, TRP-2, maps to and is located at the mouse slaty locus. EMBO J 1992;11:527-35.
- Kroumpouzos G, Urabe K, Kobayashi T, Sakai C, Hearing VJ. Functional analysis of the slaty gene product (TRP2) as dopachrome tautomerase and the effect of a point mutation on its catalytic function. Biochem Biophys Res Commun 1994;202:1060-8. https://doi.org/10.1006/bbrc.1994.2036
- Tsukamoto K, Jackson IJ, Urabe K, Montague PM, VJ Hearing. A second tyrosinase-related protein, TRP-2, is a melanogenic enzyme termed DOPAchrome tautomerase. EMBO J 1992;11:519-26.
- Guyonneau L, Murisier F, Rossier A, Moulin A, Beermann A. Melanocytes and pigmentation are affected in dopachrome tautomerase knockout mice. Mol Cell Biol 2004;24:3396-403. https://doi.org/10.1128/MCB.24.8.3396-3403.2004
- Kim HR, Kwon HJ, Oh ST, et al. Effect of dietary metabolizable energy and crude protein concentrations on growth performance and carcass characteristics of Korean native ducks. Korean J Poult Sci 2012;39:167-75. https://doi.org/10.5536/KJPS.2012.39.3.167
- Sultana H, Seo DW, Park HB, et al. Identification of polymorphisms in plumage color related genes in Korean native duck. J Fac Agr Kyushu U 2015;60:119-26.
- Purcell S, Neale B, Todd-Brown K, et al. PLINK: a toolset for wholegenome association and population-based linkage analysis. Am J Hum Genet 2007;81:559-75. https://doi.org/10.1086/519795
- Barrett JC, Fry B, Maller J, Daly MJ. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 2005;21:263-5. https://doi.org/10.1093/bioinformatics/bth457
- Sultana H, Seo DW, Park HB, et al. Identification of MC1R SNPs and their association with plumage colors in Asian duck. J Poult Sci 2017;54:111-20. https://doi.org/10.2141/jpsa.0160047
- Choi Y, Sims GE, Murphy S, Miller JR, Chan AP. Predicting the functional effect of amino acid substitutions and indels. PLoS ONE 2012;7:e46688.
- Philipp U, Lupp B, Momke S, et al. A MITF mutation associated with a dominant white phenotype and bilateral deafness in German Fleckvieh cattle. PLoS One 2011;6:e28857. https://doi.org/10.1371/journal.pone.0028857
- Yusnizar Y, Wilbe M, Herlino AO, et al. Microphthalmia-associated transcription factor mutations are associated with white-spotted coat color in swamp buffalo. Anim Genet 2015;46:676-82. https://doi.org/10.1111/age.12334
- Schmutz SM, Berryere TG, Dreger DL. MITF and white spotting in dogs: a population study. J Hered 2009;100:66-74.
- Kimchi-Sarfaty C, Oh JM, Kim IW, et al. A "Silent" polymorphism in the MDR1 gene changes substrate specificity. Science 2007;315(5811):525-8. https://doi.org/10.1126/science.1135308
- Komar AA. Silent SNPs: impact on gene function and phenotype. Pharmacogenomics 2007;8:1075-80. https://doi.org/10.2217/14622416.8.8.1075
- Fernandez-Calero T, Cabrera-Cabrera F, Ehrlich R, Marin M. Silent polymorphisms: can the tRNA population explain changes in protein properties? Life (Basel) 2016;6:9.
- Edea Z, Kim KS. MITF gene locus is associated with coat color variation of Ethiopian cattle populations adapted to different altitude environments. In: Proceedings, 10th World Congress of Genetics Applied to Livestock Production; 2014. Canada.
- Barendse W. Haplotype analysis improved evidence for candidate genes for intramuscular fat percentage from a genome wide association study of cattle. PLoS ONE 2011;6:e29601.
- Budd PS, Jackson IJ. Structure of the mouse tyrosinaserelated protein 2/dopachrome tautomerase (Tyrp2/Dct) gene and sequence of two novel slaty alleles. Genomics 1995;29:35-43.
- April CS, Jackson IJ, Kidson SH. Molecular cloning and sequence analysis of a chicken cDNA encoding tyrosinase-related protein-2/DOPAchrome tautomerase. Gene 1998;219:45-53. https://doi.org/10.1016/S0378-1119(98)00403-X
- Niwa T, Mochii M, Nakamura A, Shiojiri N. Plumage pigmentation and expression of its regulatory genes during quail developmenthistochemical analysis using Bh (black at hatch) mutants. Mech Dev 2002;118:139-46. https://doi.org/10.1016/S0925-4773(02)00256-3
- Guibert S, Girardot M, Leveziel H, Juilien R, Oulmouden A. Pheomelanin coat colour dilution in French cattle breeds is not correlated with the TYR, TYRP1 and DCT transcription levels. Pigment Cell Res 2004;17:337-45. https://doi.org/10.1111/j.1600-0749.2004.00152.x
- Huang Y, Li Y, Burt DW, et al. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nat Genet 2013;45:776-83. https://doi.org/10.1038/ng.2657
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