DOI QR코드

DOI QR Code

The Role of N-Acetyl Transferases on Isoniazid Resistance from Mycobacterium tuberculosis and Human: An In Silico Approach

  • Unissa, Ameeruddin Nusrath (Department of Biomedical Informatics, National Institute for Research in Tuberculosis (NIRT), Indian Council of Medical Research (ICMR)) ;
  • Sukumar, Swathi (Department of Biomedical Informatics, National Institute for Research in Tuberculosis (NIRT), Indian Council of Medical Research (ICMR)) ;
  • Hanna, Luke Elizabeth (Department of Biomedical Informatics, National Institute for Research in Tuberculosis (NIRT), Indian Council of Medical Research (ICMR))
  • Received : 2017.03.04
  • Accepted : 2017.05.08
  • Published : 2017.07.31

Abstract

Background:N-acetyl transferase (NAT) inactivates the pro-drug isoniazid (INH) to N-acetyl INH through a process of acetylation, and confers low-level resistance to INH in Mycobacterium tuberculosis (MTB). Similar to NAT of MTB, NAT2 in humans performs the same function of acetylation. Rapid acetylators, may not respond to INH treatment efficiently, and could be a potential risk factor, for the development of INH resistance in humans. Methods: To understand the contribution of NAT of MTB and NAT2 of humans in developing INH resistance using in silico approaches, in this study, the wild type (WT) and mutant (MT)-NATs of MTB, and humans, were modeled and docked, with substrates and product (acetyl CoA, INH, and acetyl INH). The MT models were built, using templates 4BGF of MTB, and 2PFR of humans. Results: On the basis of docking results of MTB-NAT, it can be suggested that in comparison to the WT, binding affinity of MT-G207R, was found to be lower with acetyl CoA, and higher with acetyl-INH and INH. In case of MT-NAT2 from humans, the pattern of score with respect to acetyl CoA and acetyl-INH, was similar to MT-NAT of MTB, but revealed a decrease in INH score. Conclusion: In MTB, MT-NAT revealed high affinity towards acetyl-INH, which can be interpreted as increased formation of acetyl-INH, and therefore, may lead to INH resistance through inactivation of INH. Similarly, in MT-NAT2 (rapid acetylators), acetylation occurs rapidly, serving as a possible risk factor for developing INH resistance in humans.

Keywords

References

  1. World Health Organization. Anti-tuberculosis drug resistance in the world. Fourth Global Report. The WHO/IAUTLD Global Project on Anti-tuberculosis Drug Resistance Surveillance, 2002-2007. Geneva: World Health Organization; 2008.
  2. Winder F. Catalase and peroxidase in mycobacteria: possible relationship to the mode of action of isoniazid. Am Rev Respir Dis 1960;81:68-78. https://doi.org/10.1164/arrd.1960.81.1P1.68
  3. Zhang Y, Heym B, Allen B, Young D, Cole S. The catalaseperoxidase gene and isoniazid resistance of Mycobacterium tuberculosis . Nature 1992;358:591-3. https://doi.org/10.1038/358591a0
  4. Banerjee A, Dubnau E, Quemard A, Balasubramanian V, Um KS, Wilson T, et al. inhA, a gene encoding a target for isoniazid and ethionamide in Mycobacterium tuberculosis . Science 1994;263:227-30. https://doi.org/10.1126/science.8284673
  5. Ramaswamy S, Musser JM. Molecular genetic basis of antimicrobial agent resistance in Mycobacterium tuberculosis : 1998 update. Tuber Lung Dis 1998;79:3-29. https://doi.org/10.1054/tuld.1998.0002
  6. Payton M, Auty R, Delgoda R, Everett M, Sim E. Cloning and characterization of arylamine N-acetyltransferase genes from Mycobacterium smegmatis and Mycobacterium tuberculosis : increased expression results in isoniazid resistance. J Bacteriol 1999;181:1343-7.
  7. Upton AM, Mushtaq A, Victor TC, Sampson SL, Sandy J, Smith DM, et al. Arylamine N-acetyltransferase of Mycobacterium tuberculosis is a polymorphic enzyme and a site of isoniazid metabolism. Mol Microbiol 2001;42:309-17. https://doi.org/10.1046/j.1365-2958.2001.02648.x
  8. Bhakta S, Besra GS, Upton AM, Parish T, Sholto-Douglas-Vernon C, Gibson KJ, et al. Arylamine N-acetyltransferase is required for synthesis of mycolic acids and complex lipids in Mycobacterium bovis BCG and represents a novel drug target. J Exp Med 2004;199:1191-9. https://doi.org/10.1084/jem.20031956
  9. Evans DA, Manley KA, Mc KV. Genetic control of isoniazid metabolism in man. Br Med J 1960;2:485-91. https://doi.org/10.1136/bmj.2.5197.485
  10. Hickman D, Palamanda JR, Unadkat JD, Sim E. Enzyme kinetic properties of human recombinant arylamine N-acetyltransferase 2 allotypic variants expressed in Escherichia coli . Biochem Pharmacol 1995;50:697-703. https://doi.org/10.1016/0006-2952(95)00182-Y
  11. Parkin DP, Vandenplas S, Botha FJ, Vandenplas ML, Seifart HI, van Helden PD, et al. Trimodality of isoniazid elimination: phenotype and genotype in patients with tuberculosis. Am J Respir Crit Care Med 1997;155:1717-22. https://doi.org/10.1164/ajrccm.155.5.9154882
  12. Vatsis KP, Weber WW, Bell DA, Dupret JM, Evans DA, Grant DM, et al. Nomenclature for N-acetyltransferases. Pharmacogenetics 1995;5:1-17. https://doi.org/10.1097/00008571-199502000-00001
  13. Kinzig-Schippers M, Tomalik-Scharte D, Jetter A, Scheidel B, Jakob V, Rodamer M, et al. Should we use N-acetyltransferase type 2 genotyping to personalize isoniazid doses? Antimicrob Agents Chemother 2005;49:1733-8. https://doi.org/10.1128/AAC.49.5.1733-1738.2005
  14. Azuma J, Ohno M, Kubota R, Yokota S, Nagai T, Tsuyuguchi K, et al. NAT2 genotype guided regimen reduces isoniazid-induced liver injury and early treatment failure in the 6-month four-drug standard treatment of tuberculosis: a randomized controlled trial for pharmacogenetics-based therapy. Eur J Clin Pharmacol 2013;69:1091-101. https://doi.org/10.1007/s00228-012-1429-9
  15. Huang YS, Chern HD, Su WJ, Wu JC, Lai SL, Yang SY, et al. Polymorphism of the N-acetyltransferase 2 gene as a susceptibility risk factor for antituberculosis drug-induced hepatitis. Hepatology 2002;35:883-9. https://doi.org/10.1053/jhep.2002.32102
  16. Ohno M, Yamaguchi I, Yamamoto I, Fukuda T, Yokota S, Maekura R, et al. Slow N-acetyltransferase 2 genotype affects the incidence of isoniazid and rifampicin-induced hepatotoxicity. Int J Tuberc Lung Dis 2000;4:256-61.
  17. Saukkonen JJ, Cohn DL, Jasmer RM, Schenker S, Jereb JA, Nolan CM, et al. An official ATS statement: hepatotoxicity of antituberculosis therapy. Am J Respir Crit Care Med 2006;174:935-52. https://doi.org/10.1164/rccm.200510-1666ST
  18. Unissa AN, Subbian S, Hanna LE, Selvakumar N. Overview on mechanisms of isoniazid action and resistance in Mycobacterium tuberculosis . Infect Genet Evol 2016;45:474-92. https://doi.org/10.1016/j.meegid.2016.09.004
  19. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-402. https://doi.org/10.1093/nar/25.17.3389
  20. Abuhammad A, Lowe ED, McDonough MA, Shaw Stewart PD, Kolek SA, Sim E, et al. Structure of arylamine N-acetyltransferase from Mycobacterium tuberculosis determined by cross-seeding with the homologous protein from M. marinum: triumph over adversity. Acta Crystallogr D Biol Crystallogr 2013;69(Pt 8):1433-46. https://doi.org/10.1107/S0907444913015126
  21. Wu H, Dombrovsky L, Tempel W, Martin F, Loppnau P, Goodfellow GH, et al. Structural basis of substrate-binding specificity of human arylamine N-acetyltransferases. J Biol Chem 2007;282:30189-97. https://doi.org/10.1074/jbc.M704138200
  22. Sali A. MODELLER: implementing 3D protein modeling. mc2, Vol. 2. San Diego: Molecular Simulations Inc.; 1995.
  23. Lovell SC, Davis IW, Arendall WB 3rd, de Bakker PI, Word JM, Prisant MG, et al. Structure validation by $C{\alpha}$ geometry: $\phi$, $\psi$ and $C{\beta}$ deviation. Proteins 2003;50:437-50. https://doi.org/10.1002/prot.10286
  24. Krissinel E, Henrick K. Protein structure comparison in 3D based on secondary structure matching (PDBeFold) followed by $C{\alpha}$ alignment, scored by a new structural similarity function. In: Proceedings of the 5th International Conference on Molecular Structural Biology; 2003 Sep 3-7; Vienna, Austria; p.88.
  25. Advanced Chemistry Development. ACD/ChemSketch, ver. 10.0. Toronto: Advanced Chemistry Development; 2006.
  26. Jones G, Willett P, Glen RC. Molecular recognition of receptor sites using a genetic algorithm with a description of desolvation. J Mol Biol 1995;245:43-53. https://doi.org/10.1016/S0022-2836(95)80037-9
  27. Accelrys Inc. Discovery studio, ver. 2. San Diego: Accelrys Inc.; 2007.
  28. Abuhammad AM, Lowe ED, Fullam E, Noble M, Garman EF, Sim E. Probing the architecture of the Mycobacterium marinum arylamine N-acetyltransferase active site. Protein Cell 2010;1:384-92. https://doi.org/10.1007/s13238-010-0037-7
  29. Fullam E, Westwood IM, Anderton MC, Lowe ED, Sim E, Noble ME. Divergence of cofactor recognition across evolution: coenzyme A binding in a prokaryotic arylamine Nacetyltransferase. J Mol Biol 2008;375:178-91. https://doi.org/10.1016/j.jmb.2007.10.019
  30. Sandy J, Mushtaq A, Kawamura A, Sinclair J, Sim E, Noble M. The structure of arylamine N-acetyltransferase from Mycobacterium smegmatis : an enzyme which inactivates the antitubercular drug, isoniazid. J Mol Biol 2002;318:1071-83. https://doi.org/10.1016/S0022-2836(02)00141-9
  31. Dassault Systemes. BIOVIA, Discovery Studio Modeling Environment. Release 4.5. San Diego: Dassault Systemes; 2015.

Cited by

  1. Benefits of Therapeutic Drug Monitoring of First Line Antituberculosis Drugs vol.20, pp.2, 2017, https://doi.org/10.2478/acm-2020-0006
  2. Acetylator Status Among Newly Diagnosed and Recurrent Tuberculosis Patients from Kupang, Eastern Part of Indonesia vol.14, pp.None, 2017, https://doi.org/10.2147/pgpm.s311952
  3. Phenylisoxazole-3/5-Carbaldehyde Isonicotinylhydrazone Derivatives: Synthesis, Characterization, and Antitubercular Activity vol.2021, pp.None, 2021, https://doi.org/10.1155/2021/6014093
  4. Genetic characterization of N-acetyltransferase 2 variants in acquired multidrug-resistant tuberculosis in Indonesia vol.22, pp.3, 2017, https://doi.org/10.2217/pgs-2020-0163
  5. Development of a limited sampling strategy for the estimation of isoniazid exposure considering N-acetyltransferase 2 genotypes in Korean patients with tuberculosis vol.127, pp.None, 2021, https://doi.org/10.1016/j.tube.2021.102052