References
- Merlini, G. and Bellotti, V., 2003, "Molecular Mechanisms of Amyloidosis," The New England Journal of Medicine, Vol. 349, No. 6, pp. 583-596. https://doi.org/10.1056/NEJMra023144
- Soto, C., 2003 "Unfolding the Role of Protein Misfolding in Neurodegenerative Diseases," Nature Reviews Neuroscience, Vol. 4, No. 1, pp. 49-60. https://doi.org/10.1038/nrn1007
- Chiti, F. and Dobson, C. M., 2006, "Protein Misfolding, Functional Amyloid, and Human Disease," Annual Review of Biochemistry, Vol. 75, pp. 333-366. https://doi.org/10.1146/annurev.biochem.75.101304.123901
- Hoppener, J. W. M., Ahren, B. and Lips, C. J. M., 2000, "Islet Amyloid and Type 2 Diabetes Mellitus," The New England Journal of Medicine, Vol. 343, No. 6, pp. 411-419. https://doi.org/10.1056/NEJM200008103430607
-
Kad, N. M., Myers, S. L., Smith, D. P., Smith, D. A., Radford, S. E. and Thomson, N. H., 2003, "Hierarchical Assembly of
${\beta}$ 2-microglobulin Amyloid in Vitro Revealed by Atomic Force Microscopy," Journal of molecular biology, Vol. 330, No. 4, pp. 785-797. https://doi.org/10.1016/S0022-2836(03)00583-7 -
Kad, N. M., Thomson, N. H., Smith, D. P., Smith, D. A. and Radford, S. E., 2001, "
${\beta}$ 2-microglobulin and its Deamidated Variant, N17D form Amyloid Fibrils with a Range of Morphologies in Vitro," Journal of Molecular Biology, Vol. 313, No. 3, pp. 559-571. https://doi.org/10.1006/jmbi.2001.5071 -
Haass, C. and Selkoe, D. J., 2007, "Soluble Protein Oligomers in Neurodegeneration: Lessons from the Alzheimer's Amyloid
${\beta}$ -peptide," Nature Reviews Molecular Cell Biology, Vol. 8, No. 2, pp. 101-112. https://doi.org/10.1038/nrm2101 -
Kotler, S. A., Walsh, P., Brender, J. R. and Ramamoorthy, A., 2014, "Differences between Amyloid-
${\beta}$ Aggregation in Solution and on the Membrane: Insights into Elucidation of the Mechanistic Details of Alzheimer's Disease," Chemical Society Reviews, Vol. 43, No. 19, pp. 6692-6700. https://doi.org/10.1039/C3CS60431D - Xu, Z., Paparcone, R. and Buehler, M. J., 2010, "Alzheimer's A(1-40) Amyloid Fibrils Feature Sizedependent Mechanical Properties," Biophysical Journal, Vol. 98, No. 10, pp. 2053-2062. https://doi.org/10.1016/j.bpj.2009.12.4317
- Lee, M., Baek, I., Chang, H. J., Yoon, G. and Na, S., 2014, "The Bond Survival Time Variation of Polymorphic Amyloid Fibrils in the Mechanical Insight," Chemical Physics Letters, Vol. 600, pp. 68-72. https://doi.org/10.1016/j.cplett.2014.03.043
- Ndlovu, H., Ashcroft, A. E., Radford, S. E. and Harris, S. A., 2013, "Molecular Dynamics Simulations of Mechanical Failure in Polymorphic Arrangements of Amyloid Fibrils Containing Structural Defects," Beilstein Journal of Nanotechnology, Vol. 4, No. 1, pp. 429-440. https://doi.org/10.3762/bjnano.4.50
- Ndlovu, H., Ashcroft, A. E., Radford, S. E. and Harris, S.A., 2012, "Effect of Sequence Variation on the Mechanical Response of Amyloid Fibrils Probed by Steered Molecular Dynamics Simulation," Biophysical Journal, Vol. 102, No. 3, pp. 587-596. https://doi.org/10.1016/j.bpj.2011.12.047
- Solar, M. and Buehler, M. J., 2014, "Tensile Deformation and Failure of Amyloid and Amyloid-like Protein Fibrils," Nanotechnology, Vol. 25, No. 10, Article ID105703.
- Yoon, G., Kwak, J., Kim, J. I., Na, S. and Eom, K., 2011, "Mechanical Characterization of Amyloid Fibrils using Coarse-grained Normal Mode Analysis," Advanced Functional Materials, Vol. 21, No. 18, pp. 3454-3463. https://doi.org/10.1002/adfm.201002493
- Yoon, G., Kim, Y. K., Eom, K. and Na, S., 2013, "Relationship between Disease-specific Structures of Amyloid Fibrils and Their Mechanical Properties," Applied Physics Letters, Vol. 102, Article ID 011914.
- Kim, J. I., Lee, M., Baek, I., Yoon, G. and Na, S., 2014, "The Mechanical Response of hIAPP Nanowires Based on Different Bending 10 Journal of Nanomaterials Direction Simulations," Physical Chemistry Chemical Physics, Vol. 16, No. 34, pp. 18493-18500. https://doi.org/10.1039/C4CP02494J
- Collins, S. R., Douglass, A., Vale, R. D. and Weissman, J. S., 2004, "Mechanism of Prion Propagation: Amyloid Growth Occurs by Monomer Addition," PLoS Biology, Vol. 2, article e321.
- Smith, J. F., Knowles, T. P. J., Dobson, C. M., MacPhee, C. E. and Welland, M. E., 2006, "Characterization of the Nanoscale Properties of Individual Amyloid Fibrils," Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 43, pp. 15806-15811. https://doi.org/10.1073/pnas.0604035103
-
Peralta, M. D. R., Karsai, A., Ngo, A., Sierra, C., Fong, K. T., Hayre, N. R., Mirzaee, N., Ravikumar, K. M., Kluber, A. J., Chen, X., Liu, G.-y., Toney, M. D., Singh, R. R. and Cox, D. L., Engineering Amyloid Fibrils from
${\beta}$ -Solenoid Proteins for Biomaterials Applications. ACS Nano 2015, 9 (1), pp. 449-463. https://doi.org/10.1021/nn5056089 - Choi, H., Chang, H. J. and Shin, Y., et al., 2015, "The Molecularmechanism of Conformational Changes of the Triplet Prion Fibrils for pH," RSC Advances, Vol. 5, No. 61, pp. 49263-49269. https://doi.org/10.1039/C5RA08015K
-
Chang, H. J., Baek, I., Lee, M. and Na, S., 2015, "Influence of Aromatic Residues on Thematerial Characteristics of A
${\beta}$ Amyloid Protofibrils at the Atomic Scale," ChemPhysChem, Vol. 16, No. 11, pp. 2403-2414. https://doi.org/10.1002/cphc.201500244 - Paparcone, R., Pires, M. A. and Buehler, M. J., 2010, "Mutations Alter the Geometry and Mechanical Properties of Alzheimer's A(1-40) Amyloid Fibrils," Biochemistry, Vol. 49, No. 41, pp. 8967-8977. https://doi.org/10.1021/bi100953t
- Lee, M., Baek, I., Choi, H., Kim, J. I. and Na, S., 2015, "Effects of Lysine Residues on Structural Charac-teristics and Stability of Tau Proteins," Biochemical and Biophysical Research Communications, Vol. 466, No. 3, pp. 486-492. https://doi.org/10.1016/j.bbrc.2015.09.056
- Yoon, G., Lee, M., Kim, J. I., Na, S. and Eom, K., 2014, "Role of Sequence and Structural Polymorphism on the Mechanical Properties of Amyloid Fibrils," PLoS ONE, Vol. 9, No. 2, Article IDe88502.
- Lee, M., Chang, H. J. and Kim, D., et al., 2015, "Relationship between Structural Composition and Material Properties of Polymorphic hIAPP Fibrils," Biophysical Chemistry, Vol. 199, pp. 1-8. https://doi.org/10.1016/j.bpc.2015.02.002
- Porrini, M., Zachariae, U., Barran, P. E. and MacPhee, C. E., 2013, "Effect of Protonation State on the Stability of Amyloid Oligomers Assembled from TTR(105-115)," The Journal of Physical Chemistry Letters, Vol. 4, No. 8, pp. 1233-1238. https://doi.org/10.1021/jz400372u
- Andreasen, M., Skeby, K. K. and Zhang, S., et al., 2014, "The Importance of Being Capped: Terminal Capping of an Amyloidogenic Peptide Affects Fibrillation Propensity and Fibril Morphology," Biochemistry, Vol. 53, No. 44, pp. 6968-6980. https://doi.org/10.1021/bi500674u
- Tao, K., Wang, J. and Zhouet, P. et al., 2011, "Selfassembly of ShortA(16-22) Peptides: Effect of Terminal Capping and the Role of Electrostatic Interaction," Langmuir, Vol. 27, No. 6, pp. 2723-2730. https://doi.org/10.1021/la1034273
- Castelletto, V., Hamley, I. W. and Cenker, C. et al., 2011, "Influence of End-capping on the Self-assembly of Model Amyloid Peptide Fragments," Journal of Physical Chemistry B, Vol. 115, No. 9, pp. 2107-2116. https://doi.org/10.1021/jp111168s
- Rapezzi, C., Quarta, C. C. and Riva, L., et al., 2010, "Transthyretin-related Amyloidoses and the Heart: a Clinical Overview," Nature Reviews Cardiology, Vol. 7, No. 7, pp. 398-408. https://doi.org/10.1038/nrcardio.2010.67
- Dungu, J. N., Anderson, L. J., Whelan, C. J. and Hawkins, P. N., 2012, "Cardiac Transthyretin Amyloidosis," Heart, Vol. 98, No. 21, pp. 1546-1554. https://doi.org/10.1136/heartjnl-2012-301924
- Humphrey, W., Dalke, A. and Schulten, K., 1996, "VMD: Visual Molecular Dynamics," Journal of Molecular Graphics, Vol. 14, No. 1, pp. 33-38. https://doi.org/10.1016/0263-7855(96)00018-5
-
Fitzpatrick, A. W. P., Debelouchina, G. T. and Bayro, M. J., et al., 2013, "Atomic Structure and Hierarchical Assembly of a Cross-
${\beta}$ Amyloid Fibril," Proceedings of the National Academy of Sciences of the United States of America, Vol. 110, No. 14, pp. 5468-5473. https://doi.org/10.1073/pnas.1219476110 - Jaroniec, C. P., MacPhee, C. E., Bajaj, V. S., McMahon, M. T., Dobson, C. M. and Griffin, R. G., 2004, "High-resolution Molecular Structure of a Peptide in an Amyloid Fibril Determined by Magic Angle Spinning NMR Spectroscopy," Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 3, pp. 711-716. https://doi.org/10.1073/pnas.0304849101
- Jaroniec, C. P., MacPhee, C. E., Astrof, N. S., Dobson, C. M. and Griffin, R. G., 2002, "Molecular Conformation of a Peptide Fragment of Transthyretin in an Amyloid Fibril," Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 26, pp. 16748-16753. https://doi.org/10.1073/pnas.252625999
- Phillips, J. C., Braun, R., Wang, W., et al., 2005, "Scalable Molecular Dynamics with NAMD," Journal of Computational Chemistry, Vol. 26, No. 16, pp. 1781-1802. https://doi.org/10.1002/jcc.20289
- Choi, B., Yoon, G., Lee, S. W. and Eom, K., 2015, "Mechanical Deformation Mechanisms and Properties of Amyloid Fibrils," Physical Chemistry Chemical Physics, Vol. 17, No. 2, pp. 1379-1389. https://doi.org/10.1039/C4CP03804E
- Paparcone, R. and Buehler, M. J., 2011, "Failure of A(1-40) Amyloid Fibrils under Tensile Loading," Biomaterials, Vol. 32, No. 13, pp. 3367-3374. https://doi.org/10.1016/j.biomaterials.2010.11.066
- Paparcone, R., Keten, S. and Buehler, M. J., 2010, "Atomistic Simulation of Nanomechanical Properties of Alzheimer's AΒ(1-40) Amyloid Fibrils under Compressive and Tensile Loading," Journal of Biomechanics, Vol. 43, No. 6, pp. 1196-1201. https://doi.org/10.1016/j.jbiomech.2009.11.026
- Paparcone, R., Keten, S. and Buehler, M., 2009, "Amyloid Nanofibrils under Compressive Loading," Journal of Biomechanics, Vol. 43, pp. 1196-1201.
- Meersman, F., Cabrera, R. Q., McMillan, P. F. and Dmitriev, V., 2011, "Structural and Mechanical Properties of TTR105-115 Amyloid Fibrils from Compression Experiments," Biophysical Journal, Vol. 100, No. 1, pp. 193-197. https://doi.org/10.1016/j.bpj.2010.11.052
- Cherny, I. and Gazit, E., 2008, "Amyloids: Not Only Pathological Agents but also Ordered Nanomaterials," Angewandte Chemie - International Edition, Vol. 47, No. 22, pp. 4062-4069. https://doi.org/10.1002/anie.200703133
- Lee, M. and Na, S., 2016, "End Capping Alters the Structural Characteristics and Mechanical Properties of Transthyretin (105-115) Amyloid Protofibrils," ChemPhysChem, Vol. 17, No. 3, pp. 425-432. https://doi.org/10.1002/cphc.201500945
- Lee, M., Choi, H. and Na, S., Effects of End- Terminal Capping on Transthyretin (105-115) Amyloid Protofibrils Using Steered Molecular Dynamics. Journal of Nanomaterials 2016, 2016, 10.