DOI QR코드

DOI QR Code

Synonymy of Micropolyspora internatus and Saccharomonospora viridis and Emended Description of Saccharomonospora viridis

  • Shin, Su-Kyoung (BK21PLUS Program in Embodiment: Health-Society Interaction, Department of Public Health Sciences, Graduate School, Korea University) ;
  • Cho, Yong-Joon (Chunlab, Inc.) ;
  • Yi, Hana (BK21PLUS Program in Embodiment: Health-Society Interaction, Department of Public Health Sciences, Graduate School, Korea University)
  • 투고 : 2016.10.17
  • 심사 : 2016.10.28
  • 발행 : 2017.01.28

초록

Transfer of Micropolyspora internatus into the genus Saccharomonospora as "Saccharomonospora internatus comb. nov." was proposed by Kurup and Greiner-Mai, but the nomenclatural change has not been validly published. Although the inclusion of M. internatus in the genus Saccharomonospora has not being established, the synonymy of "Saccharomonospora internatus" and S. viridis was proposed by Greiner-Mai. A number of recent publications regarded M. internatus as a synonym of S. viridis, but the name M. internatus is still used in some cases instead of S. viridis. This is because of the complicated history of M. internatus and S. viridis, but it is different from the generally accepted view of prokaryotic taxonomy. To clearly verify the synonymy of M. internatus and S. viridis, a literature review and experimental verification were conducted in this study. Based on the genomic and phenotypic characteristics obtained in this study, the synonymy of the two species was obvious. The emended description of S. viridis is given.

키워드

참고문헌

  1. Nonomura H, Ohara Y. 1971. Distribution of actinomycetes in soil. 10 new genus and species of monosporic actinomycetes. J. Ferment. Technol. 49: 895-903.
  2. Lechevalier MP, Lechevalier H. 1970. Chemical composition as a criterion in the classification of aerobic actinomycetes. Int. J. Syst. Bacteriol. 20: 435-443. https://doi.org/10.1099/00207713-20-4-435
  3. Schuurmans DM, Olson BH, San Clemente CL. 1956. Production and isolation of thermoviridin, an antibiotic produced by Thermoactinomyces viridis n. sp. Appl. Microbiol. 4: 61-66.
  4. Skerman VBD, Mcgowan V, Sneath PHA. 1980. Approved lists of bacterial names. Int. J. Syst. Bacteriol. 30: 225-420. https://doi.org/10.1099/00207713-30-1-225
  5. Lechevalier H, Solotorovsky M, McDurmont CI. 1961. A new genus of actinomycetales - Micropolyspora gen. nov. J. Gen. Microbiol. 26: 11-18. https://doi.org/10.1099/00221287-26-1-11
  6. Zhukova RA, Tsyganov VA, Morozov VM. 1968. A new species of Micropolyspora: Micropolyspora angiospora sp. nov. Mikrobiologiya 37: 724-728.
  7. Cross T, Maciver AM, Lacey J. 1968. Thermophilic actinomycetes in mouldy hay - Micropolyspora faeni sp. nov. J. Gen. Microbiol. 50: 351-359. https://doi.org/10.1099/00221287-50-3-351
  8. Agre NS, Guzeva LN, Dorokhova LA. 1974. New species of genus Micropolyspora - Micropolyspora internatus. Microbiology 43: 577-583.
  9. Krasil'nikov NA, Agre NS. 1964. On two new species of Thermopolyspora. Hind. Antibiot. Bull. 6: 97-107.
  10. Prauser H, Momirova S. 1970. Phage sensitivity, cell wall composition and taxonomy of a thermophilic actinomycete. Z. Allg. Mikrobiol. 10: 219-222. https://doi.org/10.1002/jobm.3630100308
  11. Kurup VP. 1981. Taxonomic study of some members of Micropolyspora and Saccharomonospora. Microbiologica 4: 249-259.
  12. Korn-Wendisch F, Kempf A, Grund E, Kroppenstedt RM, Kutzner HJ. 1989. Transfer of Faenia rectivirgula Kurup and Agre 1983 to the genus Saccharopolyspora Lacey and Goodfellow 1975, elevation of Saccharopolyspora hirsuta subsp. taberi Labeda 1987 to species level, and emended description of the genus Saccharopolyspora. Int. J. Syst. Bacteriol. 39: 430-441. https://doi.org/10.1099/00207713-39-4-430
  13. Zhang ZS, Wang Y, Ruan JS. 1998. Reclassification of Thermomonospora and Microtetraspora. Int. J. Syst. Bacteriol. 48: 411-422. https://doi.org/10.1099/00207713-48-2-411
  14. Greiner-Mai E, Kroppenstedt RM, Korn-Wendisch F, Kutzner HJ. 1987. Morphological and biochemicalcharacterization and emended descriptions of thermophilic actinomycetes species. Syst. Appl. Microbiol. 9: 97-109. https://doi.org/10.1016/S0723-2020(87)80062-0
  15. Greiner-Mai E, Korn-Wendisch F, Kutzner HJ. 1988. Taxonomic revision of the genus Saccharomonospora and description of Saccharomonospora glauca sp. nov. Int. J. Syst. Bacteriol. 38: 398-405. https://doi.org/10.1099/00207713-38-4-398
  16. Wayne L, Brenner D, Colwell R, Grimont P, Kandler O, Krichevsky M, et al. 1987. Report of the Ad Hoc Committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37: 463-464. https://doi.org/10.1099/00207713-37-4-463
  17. Yoon JH, Kim SB, Lee ST, Park YH. 1999. DNA-DNA relatedness between Saccharomonospora species: 'Saccharomonospora caesia' as a synonym of Saccharomonospora azurea. Int. J. Syst. Bacteriol. 49: 671-673. https://doi.org/10.1099/00207713-49-2-671
  18. Shriling EB, Gottlieb D. 1996. Methods for characterization of Streptomyces species. Int. J. Syst. Bacteriol. 16: 313-340.
  19. Shin SK, Kim E, Choi S, Yi H. 2016. Cochleicola gelatinilyticus gen. nov., sp. nov., isolated from a marine gastropod, Reichia luteostoma. J. Microbiol. Biotechnol. 26: 1439-1445. https://doi.org/10.4014/jmb.1604.04083
  20. Pati A, Sikorski J, Nolan M, Lapidus A, Copeland A, Del Rio TG, et al. 2009. Complete genome sequence of Saccharomonospora viridis type strain (P101T). Stand. Genomic Sci. 1: 141-149. https://doi.org/10.4056/sigs.20263
  21. Lee I, Kim YO, Park SC, Chun J. 2016. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int. J. Syst. Bacteriol. 66: 1100-1103. https://doi.org/10.1099/ijsem.0.000760
  22. Jeon YS, Lee K, Park SC, Kim BS, Cho YJ, Ha SM, Chun J. 2014. EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes. Int. J. Syst. Evol. Microbiol. 64: 689-691. https://doi.org/10.1099/ijs.0.059360-0
  23. Sohpal VK, Dey A, Singh A. 2010. MEGA biocentric software for sequence and phylogenetic analysis: a review. Int. J. Bioinform. Res. Appl. 6: 230-240. https://doi.org/10.1504/IJBRA.2010.034072
  24. Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
  25. Felsenstein J. 1993. PHYLIP (phylogenetic inference package) version 3.5c. Department of Genetics, University of Washington.
  26. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791. https://doi.org/10.1111/j.1558-5646.1985.tb00420.x
  27. Auch AF, von Jan M, Klenk HP, Goker M. 2010. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand. Genomic Sci. 2: 117-134. https://doi.org/10.4056/sigs.531120
  28. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM. 2007. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int. J. Syst. Evol. Microbiol. 57: 81-91. https://doi.org/10.1099/ijs.0.64483-0
  29. Kim M, Oh HS, Park SC, Chun J. 2014. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int. J. Syst. Evol. Microbiol. 64: 346-351. https://doi.org/10.1099/ijs.0.059774-0
  30. Konstantinidis KT, Tiedje JM. 2005. Genomic insights that advance the species definition for prokaryotes. Proc. Natl. Acad. Sci. USA 102: 2567-2572. https://doi.org/10.1073/pnas.0409727102
  31. Richter M, Rossello-Mora R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc. Natl. Acad. Sci. USA 106: 19126-19131. https://doi.org/10.1073/pnas.0906412106
  32. Meier-Kolthoff JP, Auch AF, Klenk HP, Goker M. 2013. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 14: 60. https://doi.org/10.1186/1471-2105-14-60
  33. Tindall BJ, Rossello-Mora R, Busse HJ, Ludwig W, Kampfer P. 2010. Notes on the characterization of prokaryote strains for taxonomic purposes. Int. J. Syst. Evol. Microbiol. 60: 249-266. https://doi.org/10.1099/ijs.0.016949-0

피인용 문헌

  1. Taxonomic note on the family Pseudonocardiaceae based on phylogenomic analysis and descriptions of Allosaccharopolyspora gen. nov. and Halosaccharopolyspora gen. nov vol.71, pp.10, 2017, https://doi.org/10.1099/ijsem.0.005075