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DNA Analysis Method based on Cloud

클라우드 기반의 유전체 분석 방법

  • Published : 2017.12.28
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Abstract

Keywords

References

  1. 최무림, "차세대 시퀀싱 기법을 이용한 의학 유전체학의 발전 동향", 분자세포생물학뉴스레터, 2014년 4월.
  2. https://www.genome.gov/sequencingcostsdata/
  3. Schatz MC, Langmead B, Salzberg SL., "Cloud computing and the DNA data race," Nat Biotechno, 2010, Vol. 28, No. 7, pp. 691-693. https://doi.org/10.1038/nbt0710-691
  4. Baker M., "Next-generation sequencing: adjusting to data overload," Nat Meth, 2010, Vol. 7, No. 7, pp. 495-499. https://doi.org/10.1038/nmeth0710-495
  5. Calabrese B, Cannataro M., "Bioinformatics and microarray data analysis on the cloud," Meth Mol Biol, 2016, Vol. 1375, pp. 25-39.
  6. http://ngenebio.com/
  7. 이창용, "차세대 염기서열 데이터의 생물정보학적 분석", BRIC View 동향리포트,2016
  8. https://www.bioin.or.kr/board.do?cmd=view&bid=tech&num=216321
  9. BWA, https://github.com/lh3/bwa
  10. GATK, https://software.broadinstitute.org/gatk/
  11. Langmead B, Trapnell C, Pop M, Salzberg SL., "Ultrafast and memory-efficient alignment of short DNA sequences to the human genome," Genome biology, 2009 Mar 4, Vol. 10, No. 3.
  12. http://broadinstitute.github.io/picard/
  13. https://github.com/GregoryFaust/samblaster
  14. https://github.com/broadinstitute/mutect
  15. https://hpc.nih.gov/apps/MutSig.html
  16. https://github.com/ekg/freebayes
  17. https://github.com/WGLab/doc-ANNOVAR/
  18. https://www.ensembl.org/vep
  19. https://gencore.bio.nyu.edu/variant-calling-pipeline/
  20. https://wikis.utexas.edu/display/bioiteam/DNAseq+Variant+Calling+Pipeline
  21. https://hadoop.apache.org/
  22. https://spark.apache.org/
  23. Decap D, Reumers J, Herzeel C, Costanza P, Fostier J., "Halvade: scalable sequence analysis with MapReduce," Bioinformatics, 2015 Mar 26, Vol. 31, No. 15, pp. 2482-2488. https://doi.org/10.1093/bioinformatics/btv179
  24. https://github.com/citiususc/BigBWA
  25. https://github.com/citiususc/SparkBW
  26. Junehawk Lee, Hyeonbyeong Lee, Jihye Moon, Hyojin Kang, Seokil Song and Seok Jong Yu, "Paralleldistributed PCR duplication marking algorithm integrated with genome sequence alignment by using streaming technology," Proceedings of TBC 2017, 2017.