References
- Aslan, Y., Tadjuidje, E., Zorn, A.M., and Cha, S.W. (2017). High-efficiency non-mosaic CRISPR-mediated knock-in and indel mutation in F0 Xenopus. Development 144, 2852-2858. https://doi.org/10.1242/dev.152967
- Bae, S., Park, J., and Kim, J.S. (2014). Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases. Bioinformatics 30, 1473-1475. https://doi.org/10.1093/bioinformatics/btu048
- Blitz, I.L., Biesinger, J., Xie, X., and Cho, K.W. (2013). Biallelic genome modification in F(0) Xenopus tropicalis embryos using the CRISPR/Cas system. Genesis 51, 827-834. https://doi.org/10.1002/dvg.22719
- Harland, R.M., and Grainger, R.M. (2011). Xenopus research: metamorphosed by genetics and genomics. Trends Genet. 27, 507-515. https://doi.org/10.1016/j.tig.2011.08.003
- Kim, H., and Kim, J.S. (2014). A guide to genome engineering with programmable nucleases. Nat. Rev. Genet. 15, 321-334. https://doi.org/10.1038/nrg3686
- Kim, Y., Cheong, S.A., Lee, J.G., Lee, S.W., Lee, M.S., Baek, I.J. and Sung, Y.H. (2016). Generation of knockout mice by Cpf1-mediated gene targeting. Nat Biotechnol 34, 808-810. https://doi.org/10.1038/nbt.3614
- Kim, K., Ryu, S.M., Kim, S.T., Baek, G., Kim, D., Lim, K., Chung, E., Kim, S., and Kim, J.S. (2017a). Highly efficient RNA-guided base editing in mouse embryos. Nat. Biotechnol. 35, 435-437. https://doi.org/10.1038/nbt.3816
- Kim, Y.B., Komor, A.C., Levy, J.M., Packer, M.S., Zhao, K.T., and Liu, D.R. (2017b). Increasing the genome-targeting scope and precision of base editing with engineered Cas9-cytidine deaminase fusions. Nat. Biotechnol. 35, 371-376. https://doi.org/10.1038/nbt.3803
- Komor, A.C., Kim, Y.B., Packer, M.S., Zuris, J.A., and Liu, D.R. (2016). Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage. Nature 533, 420-424. https://doi.org/10.1038/nature17946
- Lei, Y., Guo, X., Liu, Y., Cao, Y., Deng, Y., Chen, X., Cheng, C.H., Dawid, I.B., Chen, Y., and Zhao, H. (2012). Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs). Proc. Natl. Acad. Sci. USA 109, 17484-17489. https://doi.org/10.1073/pnas.1215421109
- Liang, P., Sun, H., Sun, Y., Zhang, X., Xie, X., Zhang, J., Zhang, Z., Chen, Y., Ding, C., Xiong, Y., et al. (2017). Effective gene editing by high-fidelity base editor 2 in mouse zygotes. Protein Cell 8, 601-611. https://doi.org/10.1007/s13238-017-0418-2
- Ma, Y., Zhang, J., Yin, W., Zhang, Z., Song, Y., and Chang, X. (2016). Targeted AID-mediated mutagenesis (TAM) enables efficient genomic diversification in mammalian cells. Nat. Methods 13, 1029-1035. https://doi.org/10.1038/nmeth.4027
- Nakayama, T., Fish, M.B., Fisher, M., Oomen-Hajagos, J., Thomsen, G.H., and Grainger, R.M. (2013). Simple and efficient CRISPR/Cas9-mediated targeted mutagenesis in Xenopus tropicalis. Genesis 51, 835-843. https://doi.org/10.1002/dvg.22720
- Nishida, K., Arazoe, T., Yachie, N., Banno, S., Kakimoto, M., Tabata, M., Mochizuki, M., Miyabe, A., Araki, M., Hara, K.Y., et al. (2016). Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems. Science 353, pii: aaf8729.
- Rees, H.A., Komor, A.C., Yeh, W.H., Caetano-Lopes, J., Warman, M., Edge, A.S.B., and Liu, D.R. (2017). Improving the DNA specificity and applicability of base editing through protein engineering and protein delivery. Nat. Commun. 8, 15790. https://doi.org/10.1038/ncomms15790
- Sakane, Y., Sakuma, T., Kashiwagi, K., Kashiwagi, A., Yamamoto, T., and Suzuki, K.T. (2014). Targeted mutagenesis of multiple and paralogous genes in Xenopus laevis using two pairs of transcription activator-like effector nucleases. Dev. Growth Differ. 56, 108-114. https://doi.org/10.1111/dgd.12105
- Shimatani, Z., Kashojiya, S., Takayama, M., Terada, R., Arazoe, T., Ishii, H., Teramura, H., Yamamoto, T., Komatsu, H., Miura, K., et al. (2017). Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion. Nat. Biotechnol. 35, 441-443. https://doi.org/10.1038/nbt.3833
- Young, J.J., Cherone, J.M., Doyon, Y., Ankoudinova, I., Faraji, F.M., Lee, A.H., Ngo, C., Guschin, D.Y., Paschon, D.E., Miller, J.C., et al. (2011). Efficient targeted gene disruption in the soma and germ line of the frog Xenopus tropicalis using engineered zinc-finger nucleases. Proc. Natl. Acad. Sci. USA 108, 7052-7057. https://doi.org/10.1073/pnas.1102030108
- Zhang, Y., Qin, W., Lu, X., Xu, J., Huang, H., Bai, H., Li, S., and Lin, S. (2017). Programmable base editing of zebrafish genome using a modified CRISPR-Cas9 system. Nat. Commun. 8, 118. https://doi.org/10.1038/s41467-017-00175-6
- Zong, Y., Wang, Y., Li, C., Zhang, R., Chen, K., Ran, Y., Qiu, J.L., Wang, D., and Gao, C. (2017). Precise base editing in rice, wheat and maize with a Cas9-cytidine deaminase fusion. Nat. Biotechnol. 35, 438-440. https://doi.org/10.1038/nbt.3811
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