Acknowledgement
Supported by : Dong-A University
References
- Kalman LV, Lubin IM, Barker S, du Sart D, Elles R, Grody WW, et al. Current landscape and new paradigms of proficiency testing and external quality assessment for molecular genetics. Arch Pathol Lab Med 2013;137:983-8. https://doi.org/10.5858/arpa.2012-0311-RA
- Corbisier P, Pinheiro L, Mazoua S, Kortekaas AM, Chung PY, Gerganova T, et al. DNA copy number concentration measured by digital and droplet digital quantitative PCR using certified reference materials. Anal Bioanal Chem 2015;407:1831-40. https://doi.org/10.1007/s00216-015-8458-z
- Schrijver I, Aziz N, Farkas DH, Furtado M, Gonzalez AF, Greiner TC, et al. Opportunities and challenges associated with clinical diagnostic genome sequencing: a report of the Association for Molecular Pathology. J Mol Diagn 2012;14:525-40. https://doi.org/10.1016/j.jmoldx.2012.04.006
- Gargis AS, Kalman L, Berry MW, Bick DP, Dimmock DP, Hambuch T, et al. Assuring the quality of next- generation sequencing in clinical laboratory practice. Nat Biotechnol 2012;30:1033-6. https://doi.org/10.1038/nbt.2403
- Chen B, Gagnon M, Shahangian S, Anderson NL, Howerton DA, Boone JD, et al. Good laboratory practices for molecular genetic testing for heritable diseases and conditions. MMWR Recomm Rep 2009;58(RR-6):1-37.
- Chen B, O'Connell CD, Boone DJ, Amos JA, Beck JC, Chan MM, et al. Developing a sustainable process to provide quality control materials for genetic testing. Genet Med 2005;7:534-49. https://doi.org/10.1097/01.GIM.0000183043.94406.81
- Holden MJ, Madej RM, Minor P, Kalman LV. Molecular diagnostics: harmonization through reference materials, documentary standards and proficiency testing. Expert Rev Mol Diagn 2011;11:741-55. https://doi.org/10.1586/erm.11.50
- National Institutes of Standards and Technology (NIST), RM 8398. https://www-s.nist.gov/srmors/view_detail.cfm?srm=8398 (Updated in 2015).
- International Organization for Standardization, ISO Guide 30:2015- Reference materials- Selected terms and definitions. https://www.iso.org/obp/ui/#iso:std:iso:guide:30:ed-3:v1:en. (Updated on Feb 2015).
- National Institute of Standards and Technology (NIST). http://www.nist.gov/srm/.
- European Reference Materials Consortium. European Reference Materials (ERM). http://www.erm-crm.org/ (Updated on Apr 2016).
- World Health Organization, International reference materials. http://www.who.int/bloodproducts/ref_materials/en/ (Updated in 2016).
- Genetic Testing Reference Material Coordination Program (Get-RM), Table of Higher Order Genetic Reference Materials. http://wwwn.cdc.gov/clia/Resources/GetRM/pdf/HigherOrderGeneticRMsTableWebsite.pdf.
- Joint Committee for Traceability in Laboratory Medicine (JCTLM), http://www.bipm.org/en/committees/jc/jctlm/
- Zook JM, Chapman B, Wang J, Mittelman D, Hofmann O, Hide W, et al. Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls. Nat Biotechnol 2014;32:246-51. https://doi.org/10.1038/nbt.2835
- American College of Medical Genetics (ACMG), Standards and guidelines for clinical genetics laboratories, 2006 ed. http://www.acmg.net/Pages/ACMG_Activities/stds-2002/g.htm (Accessed on Apr 2015).
- Washington State Legislature, WAC 246-338-090 Quality control. http://app.leg.wa.gov/WAC/default.aspx?cite=246-338-090 (Accessed on Apr 2015).
- College of American Pathologists (CAP). http://www.cap.org/apps/cap.portal (Accessed on Apr 2015).
- New York State, Clinical Laboratory Evaluation Program. http://www.wadsworth.org/clep (Accessed on Apr 2015).
- Clinical and Laboratory Standards Institute. Molecular methods for clinical genetics and oncology testing; approved guideline. 3rd ed. MM01-A3. Wayne, PA: Clinical and Laboratory Standards Institute, 2012.
- Clinical and Laboratory Standards Institute. Verification and validation of multiplex nucleic acid assays; approved guideline. MM17-A. Wayne, PA: Clinical and Laboratory Standards Institute, 2008.
- NCBI, Genetic Testing Registry. http://www.ncbi.nlm.nih.gov/gtr/
- Centers for Disease Control and Prevention, Genetic Testing Reference Materials Coordination Program (GeT-RM). http://wwwn.cdc.gov/clia/Resources/GetRM/ (Updated on Mar 2015).
- Coriell Institute, Coriell Cell Repositories. https://catalog.coriell.org/
- Amos Wilson J, Pratt VM, Phansalkar A, Muralidharan K, Highsmith WE Jr, Beck JC, et al. Consensus characterization of 16 FMR1 reference materials: a consortium study. J Mol Diagn 2008;10:2-12. https://doi.org/10.2353/jmoldx.2008.070105
- Pratt VM, Caggana M, Bridges C, Buller AM, DiAntonio L, Highsmith WE, et al. Development of genomic reference materials for cystic fibrosis genetic testing. J Mol Diagn 2009;11:186-93. https://doi.org/10.2353/jmoldx.2009.080149
- Kalman L, Johnson MA, Beck J, Berry-Kravis E, Buller A, Casey B, et al. Development of genomic reference materials for Huntington disease genetic testing. Genet Med 2007;9:719-23. https://doi.org/10.1097/GIM.0b013e318156e8c1
- Baker SD, Bale S, Booker J, Buller A, Das S, Friedman K, et al. Development and characterization of reference materials for MTHFR, SERPINA1, RET, BRCA1, and BRCA2 genetic testing. J Mol Diagn 2009;11: 553-61. https://doi.org/10.2353/jmoldx.2009.090078
- Kalman L, Wilson JA, Buller A, Dixon J, Edelmann L, Geller L, et al. Development of genomic DNA reference materials for genetic testing of disorders common in people of Ashkenazi Jewish descent. J Mol Diagn 2009; 11:530-6. https://doi.org/10.2353/jmoldx.2009.090050
- Kalman L, Leonard J, Gerry N, Tarleton J, Bridges C, Gastier-Foster JM, et al. Quality assurance for Duchenne and Becker muscular dystrophy genetic testing: development of a genomic DNA reference material panel. J Mol Diagn 2011;13:167-74. https://doi.org/10.1016/j.jmoldx.2010.11.018
- Kalman L, Tarleton J, Hitch M, Hegde M, Hjelm N, Berry-Kravis E, et al. Development of a genomic DNA reference material panel for myotonic dystrophy type 1 (DM1) genetic testing. J Mol Diagn 2013;15:518-25. https://doi.org/10.1016/j.jmoldx.2013.03.008
- Kalman LV, Tarleton JC, Percy AK, Aradhya S, Bale S, Barker SD, et al. Development of a genomic DNA reference material panel for Rett syndrome (MECP2-related disorders) genetic testing. J Mol Diagn 2014;16: 273-9. https://doi.org/10.1016/j.jmoldx.2013.11.004
- Pratt VM, Zehnbauer B, Wilson JA, Baak R, Babic N, Bettinotti M, et al. Characterization of 107 genomic DNA reference materials for CYP2D6, CYP2C19, CYP2C9, VKORC1, and UGT1A1: a GeT-RM and association for molecular pathology collaborative project. J Mol Diagn 2010;12:835-46. https://doi.org/10.2353/jmoldx.2010.100090
- Pratt VM, Everts RE, Aggarwal P, Beyer BN, Broeckel U, Epstein-Baak R, et al. Characterization of 137 genomic DNA reference materials for 28 pharmacogenetic genes: a Get-RM collaborative project. J Mol Diagn 2016;18:109-23. https://doi.org/10.1016/j.jmoldx.2015.08.005
- Personal Genome Project: Harvard- http://www.personalgenomes.org/
- Global Alliance for Genomics & Health, Benchmarking. https://genomicsandhealth.org/working-groups/benchmarking (Updated in 2016).
- Jenings L, Van Deerlin VM, Gulley ML; College of American Pathologists Molecular Pathology Resource Committee. Recommended principles and practices for validating clinical molecular pathology tests. Arch Pathol Lab Med 2009;133:743-55.
- International Organization for Standardization. ISO 15189. Medical laboratories: requirements for quality and competence. Geneva: International Organization for Standardization, 2012.
- Rehm HL, Bale SJ, Bayrak-Toydemir P, Berg JS, Brown KK, Deignan JL, et al. ACMG clinical laboratory standards for next-generation sequencing. Genet Med 2013;15:733-47. https://doi.org/10.1038/gim.2013.92
- NCBI, GeT-RM Browser. http://www.ncbi.nlm.nih.gov/variation/tools/get-rm.
- Illumina Platinum Genome. http://www.illumina.com/platinumgenomes/
- Sims DJ, Harrington RD, Polley EC, Forbes TD, Mehaffey MG, McGregor PM 3rd, et al. Plasmid-based materials as multiplex quality controls and calibrators for clinical next-generation sequencing assays. J Mol Diagn 2016;18:336-49. https://doi.org/10.1016/j.jmoldx.2015.11.008
- Wellcome Trust Sanger Institute, Catalogue of Somatic Mutations in Cancer (COSMIC). http://cancer.sanger.ac.uk/cosmic.
- Lih CJ, Sims DJ, Harrington RD, Polley EC, Zhao Y, Mehaffey MG, et al. Analytical validation and application of a targeted next-generation sequencing mutation-detection assay for use in treatment assignment in the NCI-MPACT trial. J Mol Diagn 2016;18:51-67. https://doi.org/10.1016/j.jmoldx.2015.07.006
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