참고문헌
-
Addison, J. A. and Holmes, S. B. 1995. Effect of two commercial formulations of Bacillus thuringiensis subsp. kurstaki (
$Dipel^{(R)}$ 8L and$Dipel^{(R)}$ 8AF) on the Collembolan species Folsomia candida in a soil microcosm study. Bull. Environ. Contam. Toxicol. 55:771-778. - Amann, R. I., Ludwig, W. and Schleifer, K. H. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev. 59:143-169.
- Awong, J., Bitton, G. and Chaudhry, G. R. 1990. Microcosm for assessing survival of genetically engineered microorganisms in aquatic environments. Appl. Environ. Microbiol. 56: 977-983.
- Bakker, P. A., Glandorf, D. C., Viebahn, M., Ouwens, T. W., Smit, E., Leeflang, P., Wernars, K., Thomashow, L. S., Thomas- Oates, J. E. and van Loon, L. C. 2002. Effects of Pseudomonas putida modified to produce phenazine-1-carboxylic acid and 2,4-diacetylphloroglucinol on the microflora of field grown wheat. Antonie van Leeuwenhoek 81:617-624. https://doi.org/10.1023/A:1020526126283
- Cheng, J. H., Yang, S. H., Palaniyandi, S. A., Han, J. S., Yoon, T. M., Kim, T. J. and Suh, J. W. 2010. Azalomycin F complex is an antifungal substance produced by Streptomyces malaysiensis MJM1968 isolated from agricultural soil. J. Kor. Soc. Appl. Biol. Chem. 53:545-552. https://doi.org/10.3839/jksabc.2010.084
- Choi, G. J., Kim, J. C., Park, E. J., Choi, Y. H., Jang, K. S., Lim, H. K., Cho, K. Y. and Lee, S. W. 2006. Biological control activity of two isolates of Pseudomonas fluorescens against rice sheath blight. Plant Pathol. J. 23:289-294.
- Cook, J., Bruckart, W. L., Coulson, J. R., Goettel, M. S., Humber, R. A., Lumsden, R. D., Maddox, J. V., McManus, M. L., Moore, L., Meyer, S. F., Quimby, P. C., Stack, J. P. and Vaughn, J. L. 1996. Safety of microorganisms intended for pest and plant disease control: a frame work for scientific evaluation. Biol. Contr. 7:333-351. https://doi.org/10.1006/bcon.1996.0102
- Cook, R. J. 1993. Making greater use of introduced microorganisms for biological control of plant pathogens. Annu. Rev. Phytopathol. 31:53-80. https://doi.org/10.1146/annurev.py.31.090193.000413
- Darmon, E. and Leach, D. R. 2014. Bacterial genome instability. Microbiol. Mol. Biol. Rev. 78:1-39. https://doi.org/10.1128/MMBR.masthead.78-2
- Dennis, J. J. and Zylstra, G. J. 1998. Plasposons: modular selfcloning mini-transposon derivatives for the rapid genetic analysis of gram-negative bacterial genomes. Appl. Environ. Microbiol. 64:2710-2715.
- Donegan, K. K. and Seidler, R. J. 1999. Effects of transgenic plants on soil and plant microorganisms. In Recent Research Development in Microbiology (Ed. S.G. Pandalai) olume 3-1999 Part II. Research Signpost., Trivandrum, India. 415-424.
- Duerden, B. I. 1997. Gram-negative and non-spore forming anaerobes and mobiluncus. In: Principles and practice of clinical microbiology. Eds. Emmerson, A. M., Hawkey, P. M., Gillespie, S. H. Chichester: John Wiley & Sons Ltd., pp. 641-661.
- Gardes, M. and Bruns, T. D. 1993. ITS primers with enhanced specificity for basidiomycetes: application to the identification of mycorrhiza and rusts. Mol. Ecol. 2:113-118. https://doi.org/10.1111/j.1365-294X.1993.tb00005.x
- Haas, D. and Defago, G. 2005. Biological control of soil-borne pathogens by fluorescent Pseudomonads. Nat. Rev. Microbiol. 3:307-319. https://doi.org/10.1038/nrmicro1129
- Haas, D. and Keel, C. 2003. Regulation of antibiotic production in root-colonizing Pseudomonas spp. and relevance for biological control of plant disease. Annu. Rev. Phytopathol. 41:117-153. https://doi.org/10.1146/annurev.phyto.41.052002.095656
- Hammer, O., Harper, D. A. T. and Ryan, P. D. 2001. PAST: Paleontological statistics software package for education and data analysis. Palaeontologia Electronica 4:9.
- Harrington, C. S. and On, S. L. 1999. Extensive 16s rRNA gene sequence diversity in Campylobacter hyointestinalis strains: taxonomic and applied implications. Int. J. Syst. Bacteriol. 49:1171-1175. https://doi.org/10.1099/00207713-49-3-1171
- Heo, K. R., Lee, K. Y., Lee, S. H., Jung, S. J., Lee, S. W. and Moon, B. J. 2008. Control of crisphead lettuce damping-off and bottom rot by seed coating with alginate and Pseudomonas aeruginosa LY-11. Plant. Pathol. J. 24:67-73. https://doi.org/10.5423/PPJ.2008.24.1.067
- Higuchi, R., Krummel, B. and Saiki, R. K. 1988. A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions. Nucleic Acids Res. 16:7351-7367. https://doi.org/10.1093/nar/16.15.7351
- Hugenholtz, P. and Pace, N. R. 1996. Identifying microbial diversity in the natural environment: A molecular phylogenetic approach. Trends Biotechnol. 14:190-197. https://doi.org/10.1016/0167-7799(96)10025-1
- Keane, P. J., Kerr, A. and New, P. B. 1970. Crown gall of stone fruit. II. Identification and nomenclature of agrobacterium isolates. Aust. J. Biol. Sci. 23:585-595. https://doi.org/10.1071/BI9700585
- Kim, C. H., Kim, Y. H., Anderson, A. J. and Kim, Y. C. 2014a. Proteomic analysis of a global regulator GacS sensor kinase in the rhizobacterium, Pseudomonas chlororaphis O6. Plant Pathol. J. 30:220-227. https://doi.org/10.5423/PPJ.NT.02.2014.0012
- Kim, J. S., Kim, Y. H., Anderson, A. J. and Kim, Y. C. 2014b. The sensor kinase GacS negatively regulates flagellar formation and motility in a biocontrol bacterium, Pseudomonas chlororaphis O6. Plant Pathol. J. 30:215-219. https://doi.org/10.5423/PPJ.NT.11.2013.0109
- Kong, H. G., Choi, K. H., Heo, K. R., Lee, K. Y., Lee, H. J., Moon, B. J. and Lee, S. W. 2009. Generation of a constitutive green fluorescent protein expression construct to mark biocontrol bacteria using P43 promoter from Bacillus subtilis. Plant Pathol. J. 25:136-141. https://doi.org/10.5423/PPJ.2009.25.2.136
- Kong, H. G., Lee, H. J., Bae, J. Y., Kim, N. H., Moon, B. J. and Lee, S. W. 2010. Spatial and temporal distribution of a biocontrol bacterium Bacillus licheniformis N1 on the strawberry plants. Plant Pathol. J. 26:238-244. https://doi.org/10.5423/PPJ.2010.26.3.238
- Lee, J. P., Lee, S. W., Kim, C. S., Son, J. H., Song, J. H., Lee, K. Y., Kim, H. J., Jung, S. J. and Moon, B. J. 2006. Evaluation of formulations of Bacillus licheniformis for the biological control of tomato gray mold caused by Botrytis cinerea. Biol. Cont. 37:329-337. https://doi.org/10.1016/j.biocontrol.2006.01.001
- Liu, X., Germaine, K. J., Ryan, D. and Dowling, D. N. 2010. Whole-cell fluorescent biosensors for bioavailability and biodegradation of polychlorinated biphenyls. Sensors 2:1377-1398.
- Matveeva, T. V. and Lutova, L. A. 2014. Horizontal gene transfer from Agrobacterium to plants. Front Plant Sci. 5:326.
- Metzker, M. L. 2010. Sequencing technologies - the next generation. Nat. Rev. Genet. 11:31-46. https://doi.org/10.1038/nrg2626
- Miller, W. G. and Lindow, S. E. 1997. An improved GFP cloning cassette designed for prokaryotic transcriptional fusions. Gene 191:149-153. https://doi.org/10.1016/S0378-1119(97)00051-6
- Morales, D. K., Jacobs, N. J., Rajamani, S., Krishnamurthy, M., Cubillos-Ruiz, J. R. and Hogan, D. A. 2010. Antifungal mechanisms by which a novel Pseudomonas aeruginosa phenazine toxin kills Candida albicans in biofilms. Mol. Microbiol. 78:1379-1392. https://doi.org/10.1111/j.1365-2958.2010.07414.x
- Muhling, M., Woolven-Allen, J., Colin Murrell, J. and Joint, I. 2008. Improved group-specific PCR primers for denaturing gradient gel electrophoresis analysis of the genetic diversity of complex microbial communities. ISME J. 2:379-392. https://doi.org/10.1038/ismej.2007.97
- Oh, E. T., So, J. S., Kim, B. H., Kim, J. S. and Koh, S. C. 2004. Green fluorescent protein as a marker for monitoring a pentachlorophenol degrader Sphingomonas chlorophenolica ATCC39723. J. Microbiol. 42:243-247.
- Osborn, A. M., Moore, E. R. and Timmis, K. N. 2000. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ. Microbiol. 2:39-50. https://doi.org/10.1046/j.1462-2920.2000.00081.x
- Ozyilmaz, U. and Benlioglu, K. 2013. Enhanced biological control of phytophthora blight of pepper by biosurfactant-producing Pseudomonas. Plant Pathol. J. 29:418-426. https://doi.org/10.5423/PPJ.OA.11.2012.0176
- Prieto, M. A., Hler, B. B., Jung, K. N. and Witholt, B. 1999. PhaF, a polyhydroxyalkanoate-granule-associated protein of Pseudomonas oleovorans GPo1 involved in the regulatory expression system for pha genes. J. Bacteriol. 181:858-868.
- Rashid, M. H. and Kornberg, A. 2000. Inorganic polyphosphate is needed for swimming, swarming, and twitching motilities of Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 97:4885-4890. https://doi.org/10.1073/pnas.060030097
- R Development Core Team. 2013. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL http://www.R-project.org.
- Reasoner, D. J., Blannon, J. C. and Geldreich. 1979. Rapid seven-hour fecal coliform test. Appl. Environ. Microbiol. 38:229-236.
- Rondon, M. R., August, P. R., Bettermann, A. D., Brady, S. F., Grossman, T. H., Liles, M. R., Loiacono, K. A., Lynch, B. A., MacNeil, I. A., Minor, C., Tiong, C. L., Gilman, M., Osburne, M. S., Clardy, J., Handelsman, J. and Goodman, R. M. 2000. Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microoraganisms. Appl. Environ. Microbiol. 66:2541-2547. https://doi.org/10.1128/AEM.66.6.2541-2547.2000
- Sambrook, J., Fritschi, E. F. and Maniatis, T. 1989. "Molecular cloning: a laboratory manual." Cold Spring Harbor Laboratory Press, Cold spring Harbor, New York.
- Sang, M. K., Shrestha, A., Kim, D. Y., Park, K., Park, C. H. and Kim, K. D. 2013. Biocontrol of phytophthora blight and anthracnose in pepper by sequentially selected antagonistic rhizobacteria against Phytophthora capsici. Plant Pathol. J. 29:154-167. https://doi.org/10.5423/PPJ.OA.07.2012.0104
- Schisler, D., Slininger, P., Behle, R. and Jackson, M. 2004. Formulation of Bacillus spp. for biological control of plant diseases. Phytopathology 94:1267-1271. https://doi.org/10.1094/PHYTO.2004.94.11.1267
- Scala, D. J. and Kerkhof, L. J. 2000. Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis. Appl. Environ. Microbiol. 66:1980-1986. https://doi.org/10.1128/AEM.66.5.1980-1986.2000
- Sokol, H., Lepage, P., Seksik, P., Dore, J. and Marteau, P. 2006. Temperature gradient gel electrophoresis of fecal 16S rRNA reveals active Escherichia coli in the microbiota of patients with ulcerative colitis. J. Clin. Microbiol. 44:3172-3177. https://doi.org/10.1128/JCM.02600-05
- Thomas-Oates. and Leendert, C. van Loon. 2002. Effects of Pseudomonas putida modified to produce phenazine-1-carboxylic acid and 2,4-diacetylphloroglucinol on the microflora of field grown wheat. Antonie van Leeuwenhoek 81:617-624. https://doi.org/10.1023/A:1020526126283
- Tiedje, J. M., Asuming-Brempong, S., Nusslein, K., Marsh, T. L. and Flynn, S. J. 1999. Opening the black box of soil microbial diversity. Appl. Soil Ecology 13:109-122. https://doi.org/10.1016/S0929-1393(99)00026-8
- Wang, P. Z. and Doi, R. H. 1984. Overlapping promoters transcribed by Bacillus subtilis sigma 55 and sigma 37 RNA polymerase holoenzymes during growth and stationary phase. J. Biol. Chem. 259:8619-8625.
- Wang, Y., Xu, Z., Zhu, P., Liu, Y., Zhang, Z., Mastuda, Y., Toyoda, H. and Xu, L. 2010. Postharvest biological control of melon pathogens using Bacillus subtilis EXWB1. J. Plant Pathol. 92:645-652.
- Weller, D. M. 2007. Pseudomonas biocontrol agents of soilborne pathogens: Looking back over 30 years. Phytopathology 97:250-256. https://doi.org/10.1094/PHYTO-97-2-0250
- Whipps, J. 2001. Microbial interactions and biocontrol in the rhizosphere. J. Exp. Bot. 52:487-511. https://doi.org/10.1093/jexbot/52.suppl_1.487
- White, T. J., Bruns, T. D., Lee, S. and Taylor, J. 1990. Analysis of phylogenetic relationship by amplification and direct sequencing of ribosomal RNA genes, In: PCR protocol: a guide to method and applications, eds. by M. A. Innis, D. H. Gelfond, J. J. Sainsky, and T. J. White, p. 315-322. Academic Press, New York, N.Y.
- Zhang, X. Z., Cui, Z. L., Hong, Q. and Li, S. P. 2005. High-level expression and selection of methyl parathion hydrolase in Bacillus subtilis WB800. Appl. Environ. Microbiol. 71:4101-4103. https://doi.org/10.1128/AEM.71.7.4101-4103.2005
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