DOI QR코드

DOI QR Code

A CoMFA Study of Quinazoline-based Anticancer Agents

  • Balupuri, Anand (Department of Biomedical Science, Colleage of Medicine, Chosun University) ;
  • Balasubramanian, Pavithra K. (Department of Biomedical Science, Colleage of Medicine, Chosun University) ;
  • Cho, Seung Joo (Department of Biomedical Science, Colleage of Medicine, Chosun University)
  • Received : 2015.06.30
  • Accepted : 2015.09.25
  • Published : 2015.09.30

Abstract

Cancer has emerged as one of the leading cause of deaths worldwide. A three-dimensional quantitative structure-activity relationship (3D-QSAR) analysis was performed on a series of quinazoline-based anticancer agents. Purpose of the study is to understand the structural basis for their inhibitory activity. Comparative molecular field analysis (CoMFA) technique was employed to develop 3D-QSAR model. Ligand-based alignment scheme was used to generate a reliable CoMFA model. The model produced statistically significant results with a cross-validated correlation coefficient ($q^2$) of 0.589 and a non-cross-validated correlation coefficient ($r^2$) of 0.928. Model was further validated by bootstrapping and progressive scrambling analysis. This study could assist in the design of novel and more potent anticancer agents.

Keywords

References

  1. WHO, Cancer, http://www.who.int/cancer/en/, 2015.
  2. V. T. Jr. DeVita and E. Chu, "A history of cancer chemotherapy", Cancer Res., Vol. 68, pp. 8643-8653, 2008. https://doi.org/10.1158/0008-5472.CAN-07-6611
  3. S. K. Tahir, E. K. Han, B. Credo, H. S. Jae, J. A. Pietenpol, C. D. Scatena, J. R. Wu-Wong, D. Frost, H. Sham, S. H. Rosenberg, and S. C. Ng, "A-204197, a new tubulin-binding agent with antimitotic activity in tumor cell lines resistant to known microtubule inhibitors." Cancer Res., Vol. 61, pp. 5480-5485, 2001.
  4. H. Prinz, Y. Ishii, T. Hirano, T. Stoiber, J. A. Camacho Gomez, P. Schmidt, H. Dussmann, A. M. Burger, J. H. Prehn, E. G. Gunther, E. Unger, and K. Umezawa, "Novel benzylidene-9(10H)-anthracenones as highly active antimicrotubule agents. Synthesis, antiproliferative activity, and inhibition of tubulin polymerization", J. Med. Chem., Vol. 46, pp. 3382-3394, 2003. https://doi.org/10.1021/jm0307685
  5. R. Romagnoli, P. G. Baraldi, V. Remusat, M. D. Carrion, C. L. Cara, D. Preti, F. Fruttarolo, M. G. Pavani, M. A. Tabrizi, M. Tolomeo, S. Grimaudo, J. Balzarini, M. A. Jordan, and E. Hamel, "Synthesis and biological evaluation of 2-(3',4',5'-trimethoxybenzoyl)-3-amino 5-aryl thiophenes as a new class of tubulin inhibitors", J. Med. Chem., Vol. 49, pp. 6425-6428, 2006. https://doi.org/10.1021/jm060804a
  6. A. Davis, J. D. Jiang, K. M. Middleton, Y. Wang, I. Weisz, Y. H. Ling, and J. G. Bekesi, "Novel suicide ligands of tubulin arrest cancer cells in Sphase" Neoplasia, Vol. 1, pp. 498-507, 1999. https://doi.org/10.1038/sj.neo.7900066
  7. M. M. Joullie, S. Berritt, and E. Hamel, "Structureactivity relationships of ustiloxin analogues", Tetrahedron Lett., Vol. 52, pp. 2136-2139, 2011. https://doi.org/10.1016/j.tetlet.2010.11.165
  8. S. Honore, E. Pasquier, and D. Braguer, "Understanding microtubule dynamics for improved cancer therapy", Cell Mol. Life Sci., Vol. 62, pp. 3039-3056, 2005.. https://doi.org/10.1007/s00018-005-5330-x
  9. K. M. R. Bhat and V. Setaluri, "Microtubule-associated proteins as targets in cancer chemotherapy", Clin. Cancer Res., Vol. 13, pp. 2849-2854, 2007.. https://doi.org/10.1158/1078-0432.CCR-06-3040
  10. K. Kuroiwa, H. Ishii, K. Matsuno, A. Asai, and Y. Suzuki, "Synthesis and structure-activity relationship study of 1-phenyl-1-(quinazolin-4-yl)ethanols as anticancer agents", ACS Med. Chem. Lett., Vol. 6, pp. 287-291, 2015. https://doi.org/10.1021/ml5004684
  11. A. Balupuri and S. J. Cho, "Exploration of the binding mode of indole derivatives as potent HIV-1 inhibitors using molecular docking simulations", J. Chosun Natural Sci., Vol. 6, pp. 138-142, 2013. https://doi.org/10.13160/ricns.2013.6.3.138
  12. A. Balupuri, P. K. Balasubramanian, and S. J. Cho, "A CoMFA study of glycogen synthase kinase 3 inhibitors", J. Chosun Natural Sci., Vol. 8, pp. 40-47, 2015. https://doi.org/10.13160/ricns.2015.8.1.40
  13. P. K. Balasubramanian, A. Balupuri, and S. J. Cho, "A CoMFA study of phenoxypyridine-based JNK3 inhibitors using various partial charge schemes", J. Chosun Natural Sci., Vol. 7, pp. 45-49, 2014. https://doi.org/10.13160/ricns.2014.7.1.45
  14. P. K. Balasubramanian, A. Balupuri, and S. J. Cho, "Ligand-based CoMFA study on pyridylpyrazolopyridine derivatives as PKC${\theta}$ kinase inhibitors", J. Chosun Natural Sci., Vol. 7, pp. 253-259, 2014. https://doi.org/10.13160/ricns.2014.7.4.253
  15. P. K. Balasubramanian and S. J. Cho, "HQSAR analysis on novel series of 1-(4-phenylpiperazin-1-yl-2-(1H-Pyrazol-1-yl) ethanone derivatives targeting CCR1", J. Chosun Natural Sci., Vol. 6, pp. 163-169, 2013. https://doi.org/10.13160/ricns.2013.6.3.163
  16. SYBYLx2.1, Tripos International, South Hanley Road, St. Louis, Missouri, 63144, USA, 1699.
  17. R. D. Cramer, D. E. Patterson, and J. D. Bunce, "Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins", J. Am. Chem. Soc., Vol. 110, pp. 5959-5967, 1988. https://doi.org/10.1021/ja00226a005
  18. S. Wold, A. Ruhe, H. Wold, and I. W. Dunn, "The collinearity problem in linear regression. The partial least squares (PLS) approach to generalized inverses", SIAM J. Sci. Comput., Vol. 5, pp 735-743, 1984. https://doi.org/10.1137/0905052
  19. R. D. Cramer, J. D. Bunce, D. E. Patterson, and I. E. Frank, "Crossvalidation, bootstrapping, and partial least squares compared with multiple regression in conventional QSAR studies", Quant. Struct. Act. Relat., Vol. 7, pp. 18-25, 1988. https://doi.org/10.1002/qsar.19880070105

Cited by

  1. Comparative Molecular Field Analysis of Pyrrolopyrimidines as LRRK2 Kinase Inhibitors vol.9, pp.1, 2016, https://doi.org/10.13160/ricns.2016.9.1.1
  2. Molecular Docking Studies of p21-Activated Kinase-1 (PAK1) Inhibitors vol.9, pp.3, 2016, https://doi.org/10.13160/ricns.2016.9.3.161
  3. HQSAR Study on Substituted 1H-Pyrazolo[3,4-b]pyridines Derivatives as FGFR Kinase Antagonists vol.10, pp.2, 2015, https://doi.org/10.13160/ricns.2017.10.2.85