Molecular Identification and Distribution Pattern of Fish Eggs Collected around Jejudo Island

제주 연안해역 어란의 분자동정과 분포양상

  • Han, Song-Hun (Jeju Fisheries Research Institute, National Institute of Fisheries Science) ;
  • Kim, Maeng Jin (Fisheries Resources and Environment Division, National Institute of Fisheries Science) ;
  • Song, Choon Bok (College of Ocean Sciences, Jeju National University)
  • 한송헌 (국립수산과학원 제주수산연구소) ;
  • 김맹진 (국립수산과학원 서해수산연구소) ;
  • 송춘복 (제주대학교 해양과학대학)
  • Received : 2015.10.01
  • Accepted : 2015.12.26
  • Published : 2015.12.31

Abstract

Monthly variation of species composition and abundance of fish eggs were examined to know the spawning time and location of the fishes inhabiting the coastal region of Jejudo Island. Samplings had been performed at the four locations (Jeju port, Seongsanpo, Seogwipo port and Chagwido) with a bongo net which was towed monthly at the sea surface from August 2006 to July 2007. The fish eggs were identified based on phylogenetic analyses with the DNA sequences generated through PCR-amplification and sequencing of the mitochondrial cytochrome b gene. Among a total of 43 taxa classified during the study period, 34 were identified to species, 4 to families, and the remaining 5 were unidentified. Of them, 23 taxa were occurred at Jeju port, 21 at Seongsanpo, 19 at Seogwipo port and 18 at Chagwido, whereas 15 taxa were found in September 2006, 12 in June 2007, 6 to 8 in August 2006 and January~May 2007, 5 in each October and November 2006, 3 in each December 2006 and July 2007. Among 34 species of fish eggs, Engraulis japonicus and Callanthias japonicus most frequently appeared at 16 times out of 48 observations in total. When those eggs were collected, the surface seawater temperature ranged $14.0{\sim}28.6^{\circ}C$ for E. japonicus and $14.9{\sim}20.5^{\circ}C$ for C. japonicus. The success rates of PCR-amplification and species identification in this study were 68.3% and 79.1%, respectively.

이 연구는 제주도 주변 4개의 정점에서 채집된 어란의 월별 종조성 및 출현량을 알아보기 위해 실시하였다. 현장조사는 2006년 8월부터 2007년 7월까지 봉고네트를 이용하여 월별로 표층채집을 하였으며, 종동정은 채집된 어란의 미토콘드리아 cytochrome b 유전자 (cyt b) 염기서열을 성어 염기서열과 상호 비교함으로써 이루어졌다. 채집된 어란은 총 43개의 분류군으로 분류되었고, 이중 34종 (6목 24과 33속)은 종 (species)까지 동정이 이루어졌다. 나머지 9종 가운데 4종은 과 (family)까지 동정할 수 있었고, 5종은 미동정되었다. 지역별로 제주항 근해에서는 23개의 분류군으로 가장 많은 분류군이 나타났고, 성상포 근해에서 21개, 서귀포항 근해에서 19개, 차귀도 근해에서는 18개의 분류군이 출현하였다. 시기별로는 2006년 9월에 15개의 분류군으로 가장 많이 나타났고, 12월과 7월에 3개의 분류군으로 가장 적게 나타났다. 동정이 이루어진 34종 중 멸치 (E. japonicus)와 노랑벤자리 (C. japonicus)가 가장 높은 출현 빈도를 보였으며, 멸치는 표층수온 $14.0{\sim}28.6^{\circ}C$에서, 노랑벤자리는 $14.9{\sim}20.5^{\circ}C$에서 출현하였다. 이번 연구에서 사용된 cyt b 유전자의 PCR 증폭 성공률은 68.3%였으며, 종동정률은 79.1%였다.

Keywords

References

  1. Aoyama, J., S. Ishikawa, T. Otake, N. Mochioka, Y. Suzuki, S. Watanabe, A. Shinoda, J. Inoue, P.M. Lokman, T. Inagaki, M. Oya, H. Hasumoto, K. Kubokawa, T.W. Lee, H. Fricke and K. Tsukamoto. 2001. Molecular approach to species identification of eggs with respect to determination of the spawning site of the Japanese eel Anguilla japonica. Fisheries Science, 67: 761-763. https://doi.org/10.1046/j.1444-2906.2001.00288.x
  2. Aranishi, F. 2006. Single fish egg DNA extraction for PCR amplification. Conservation Genetics, 7: 153-156. https://doi.org/10.1007/s10592-005-5387-y
  3. Cha, S.S. and K.J. Park. 1991. Spatio-temporal distribution of the ichthyoplankton in the Mankyong-Dongjin Estuary. Journal of the Oceanological Society of Korea, 26: 47-58.
  4. Cha, S.S. and K.J. Park. 1994. Distribution of the ichthyoplankton in Kwangyang Bay. Korean Journal of Ichthyology, 6: 60-70.
  5. Cha, S.S., S.J. Chun, J.S. Yang and K.W. Choi. 2004. Species composition and abundance of ichthyoplankton in the waters of Saemangeum, Korea 2003. Korean Journal of Ichthyology, 16: 321-330.
  6. Chun, Y.Y. 1993. A study on the reproductive ecology of frog flounder, Pleuronichthys cornutus in the Chinhae Bay. Bulletin of National Fisheries Research and Development Agency, 47: 71-82.
  7. Chun, Y.Y., S.J. Hwang, Y.H. Hur and K.H. Ho. 2004. Characteristics of the distribution of ichthyoplankton along the eastern coast of Korea. Journal of the Korean Society of Fisheries Resources, 6: 33-45.
  8. Esposti, M., S. De Vries, M. Crimi, A. Ghelli, T. Patarnello and A. Meyer. 1993. Mitochondrial cytochrome b: evolution and structure of the protein. Biochimica et Biophysica Acta, 1143: 243-271. https://doi.org/10.1016/0005-2728(93)90197-N
  9. Gleason, L.U. and R.S. Burton. 2012. High-throughput molecular identification of fish eggs using multiplex suspension bead arrays. Molecular Ecology Resources, 12: 57-66. https://doi.org/10.1111/j.1755-0998.2011.03059.x
  10. Han, K.-H. and D.-G. Kim. 2007. Quantitative variation and species composition of ichthyoplankton in coastal waters of Uljin, Korea. Korean Journal of Ichthyology, 19: 332-342.
  11. Han, K.-H., J.-S. Hong, Y.-S. Kim, K.-A. Jeon, Y.-S. Kim, B.-K. Hong and D.-S. Hwang. 2003. Species composition and seasonal variations of ichthyoplankton in coastal waters of Yeongil Bay, Korea. Korean Journal of Ichthyology, 15: 87-94.
  12. Huh, S.-H., H.C. Choi, G.W. Baeck, H.W. Kim and J.M. Park. 2013. Seasonal distribution of larval fishes in the central and southern surface waters of the East Sea. Korean Journal of Fisheries and Aquatic Sciences, 46: 216-222. https://doi.org/10.5657/KFAS.2013.0216
  13. Inoue, J.G., M. Miya, K. Tsukamoto and M. Nishida. 2001. Complete mitochondrial DNA sequence of Conger myriaster (Teleostei: Anguilliformes): novel gene order for vertebrate mitochondrial genomes and the phylogenetic implications for anguilliform families. Journal of Molecular Evolution, 52: 311-320. https://doi.org/10.1007/s002390010161
  14. Kang, G.Y. and C.B. Song. 2004. Phylogenetic relationships among groupers (genus Epinephelus) based on mitochondrial cytochrome b DNA sequences. Journal of the Korean Fisheries Society, 37: 414-422.
  15. Kim, Y., Y. Kim, H. Kang, J.K. Kim and Y.Y. Chun. 2011. Age and growth of shotted halibut Eopsetta grigorjewi in the East China Sea. Korean Journal of Ichthyology, 23: 30-36.
  16. Kim, Y.U. 1981. Fish eggs and larvae of the coastal waters in Korea. Institute of Marine Sciences, National Fisheries University of Pusan, 109pp.
  17. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequence. Journal of Molecular Evolution, 16: 111-120. https://doi.org/10.1007/BF01731581
  18. Kochzius, M., M. Nolte, H. Weber, N. Silkenbeumer, S. Hjorleifsdottir, G.O. Hreggvidsson, V. Marteinsson, K. Kappel, S. Planes, F. Tinti, A. Magoulas, E. Garcia Vazquez, C. Turan, C. Hervet, D. Campo Falgueras, A. Antoniou, M. Landi and D. Blohm. 2008. DNA microarrays for identifying fishes. Marine Biotechnology, 10: 207-217. https://doi.org/10.1007/s10126-007-9068-3
  19. Lelievre, S., V. Verrez-Bagnis, M. Jerome and S. Vaz. 2010. PCRRFLP analyses of formalin-fixed fish eggs for the mapping of spawning areas in the Eastern Channel and Southern North Sea. Journal of Plankton Research, 32: 1527-1539. https://doi.org/10.1093/plankt/fbq067
  20. Lim, T.Y., M.K. Jo and M.J. Lee. 1970. The occurrence and distribution of the fish eggs and larvae in the Korean adjacent sea. Reports of Fisheries Resource, 8: 7-29.
  21. Okiyama, M. 1988. An atlas of the early stage fishes in Japan. Tokai University press, Tokyo, 1154pp.
  22. Renuka, K. and B.N. Joshi. 2012. Photoperiodic regulation of ovarian function in the teleost fish Channa punctatus (Bloch). International Journal of Life Sciences, 1: 104-107.
  23. Saitoh, K., S. Uehara and T. Tega. 2009. Genetic identification of fish eggs collected in Sendai Bay and off Johban, Japan. Ichthyological Research, 56: 200-203. https://doi.org/10.1007/s10228-008-0073-y
  24. Saitou, N. and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4: 406-425.
  25. Sassa, C., Y. Konishi and K. Mori. 2006. Distribution of jack mackerel (Trachurus japonicus) larvae and juveniles in the East China Sea, with special reference to the larval transport by the Kuroshio Current. Fisheries Oceanography, 15: 508-518. https://doi.org/10.1111/j.1365-2419.2006.00417.x
  26. Shao, K.-T., K.-C. Chen and J.-H. Wu. 2002. Identification of marine fish eggs in Taiwan using light microscopy, scanning electric microscopy and mtDNA sequencing. Marine Freshwater Research, 53: 355-365. https://doi.org/10.1071/MF01141
  27. Shiraishi, T., K. Okamoto, M. Yoneda, T. Sakai, S. Ohshimo, S. Onoe, A. Yamaguchi and M. Matsuyama. 2008. Age validation, growth and annual reproductive cycle of chub mackerel, Scomber japonicus, off the waters of northern Kyushu and in the East China Sea. Fisheries Science, 74: 947-954. https://doi.org/10.1111/j.1444-2906.2008.01612.x
  28. Takehana, Y., N. Nagai, M. Matsuda, K. Tsuchiya and M. Sakaizumi. 2003. Geographic variation and diversity of the cytochrome b gene in Japanese wild populations of medaka, Oryzias latipes. Zoological Science, 20: 1279-1291. https://doi.org/10.2108/zsj.20.1279
  29. Yoo, J.M., S. Kim, E.K. Lee and J.S. Lee. 1992. The distribution of ichthyoplankton in Chinhae Bay. Ocean Research, 14: 77-87.