References
- Cline GW, Petersen KF, Krssak M, Shen J, Hundal RS, Trajanoski Z, et al. Impaired glucose transport as a cause of decreased insulin-stimulated muscle glycogen synthesis in type 2 diabetes. N Engl J Med 1999;341:240-246. https://doi.org/10.1056/NEJM199907223410404
- Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A, Williams CF, et al. Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nat Genet 1999;23:41-46.
- Krylov AS, Zasedateleva OA, Prokopenko DV, Rouviere-Yaniv J, Mirzabekov AD. Massive parallel analysis of the binding specificity of histone-like protein HU to single- and double- stranded DNA with generic oligodeoxyribonucleotide microchips. Nucleic Acids Res 2001;29:2654-2660. https://doi.org/10.1093/nar/29.12.2654
- Mutarelli M, Cicatiello L, Ferraro L, Grober OM, Ravo M, Facchiano AM, et al. Time-course analysis of genome-wide gene expression data from hormone-responsive human breast cancer cells. BMC Bioinformatics 2008;9 Suppl 2:S12.
- Wu X, Wang J, Cui X, Maianu L, Rhees B, Rosinski J, et al. The effect of insulin on expression of genes and biochemical pathways in human skeletal muscle. Endocrine 2007;31:5-17. https://doi.org/10.1007/s12020-007-0007-x
- Do JH, Choi DK. Clustering approaches to identifying gene expression patterns from DNA microarray data. Mol Cells 2008;25:279-288.
- Frith MC, Fu Y, Yu L, Chen JF, Hansen U, Weng Z. Detection of functional DNA motifs via statistical over-representation. Nucleic Acids Res 2004;32:1372-1381. https://doi.org/10.1093/nar/gkh299
- Wasserman WW, Sandelin A. Applied bioinformatics for the identification of regulatory elements. Nat Rev Genet 2004;5: 276-287. https://doi.org/10.1038/nrg1315
- Aerts S. Computational strategies for the genome-wide identification of cis-regulatory elements and transcriptional targets. Curr Top Dev Biol 2012;98:121-145. https://doi.org/10.1016/B978-0-12-386499-4.00005-7
- Bulyk ML. Computational prediction of transcription-factor binding site locations. Genome Biol 2003;5:201. https://doi.org/10.1186/gb-2003-5-1-201
- Janky R, Verfaillie A, Imrichová H, Van de Sande B, Standaert L, Christiaens V, et al. iRegulon: from a gene list to a gene regulatory network using large motif and track collections. PLoS Comput Biol 2014;10:e1003731. https://doi.org/10.1371/journal.pcbi.1003731
- Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, et al. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Nat Genet 2003;34:166-176. https://doi.org/10.1038/ng1165
- Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Methodol 1995;57:289-300.
- Huang da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009;4:44-57. https://doi.org/10.1038/nprot.2008.211
- Mora S, Pessin JE. The MEF2A isoform is required for striated muscle-specific expression of the insulin-responsive GLUT4 glucose transporter. J Biol Chem 2000;275:16323-16328. https://doi.org/10.1074/jbc.M910259199
- Verdeguer F, Blattler SM, Cunningham JT, Hall JA, Chim H, Puigserver P. Decreased genetic dosage of hepatic Yin Yang 1 causes diabetic-like symptoms. Mol Endocrinol 2014;28:308-316. https://doi.org/10.1210/me.2013-1173
- Jin W, Goldfine AB, Boes T, Henry RR, Ciaraldi TP, Kim EY, et al. Increased SRF transcriptional activity in human and mouse skeletal muscle is a signature of insulin resistance. J Clin Invest 2011;121:918-929. https://doi.org/10.1172/JCI41940
- Stoffel M, Stein R, Wright CV, Espinosa R 3rd, Le Beau MM, Bell GI. Localization of human homeodomain transcription factor insulin promoter factor 1 (IPF1) to chromosome band 13q12.1. Genomics 1995;28:125-126. https://doi.org/10.1006/geno.1995.1120
- Yang TT, Suk HY, Yang X, Olabisi O, Yu RY, Durand J, et al. Role of transcription factor NFAT in glucose and insulin homeostasis. Mol Cell Biol 2006;26:7372-7387. https://doi.org/10.1128/MCB.00580-06
Cited by
- Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes vol.19, pp.1, 2018, https://doi.org/10.1186/s12864-018-5173-0
- FGF2 Antiproliferative Stimulation Induces Proteomic Dynamic Changes and High Expression of FOSB and JUNB in K-Ras-Driven Mouse Tumor Cells vol.18, pp.17, 2018, https://doi.org/10.1002/pmic.201800203