Journal of Life Science (생명과학회지)

Korean Society of Life Science (한국생명과학회)
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Development of Marker-free Transgenic Rice Expressing the Wheat Storage Protein, Glu-1Dy10, for Increasing Quality Processing of Bread and Noodles

빵과 면의 가공적성 증진을 위한 밀 저장단백질 Glu-1Dy10을 발현하는 마커프리 형질전환 벼 개발

  • Park, Soo-Kwon (Department of Functional Crop, National Institute of Crop Science, Rural Development Administration) ;
  • Shin, DongJin (Department of Functional Crop, National Institute of Crop Science, Rural Development Administration) ;
  • Hwang, Woon-Ha (Department of Functional Crop, National Institute of Crop Science, Rural Development Administration) ;
  • Hur, Yeon-Jae (Department of Functional Crop, National Institute of Crop Science, Rural Development Administration) ;
  • Kim, Tae-Heon (Department of Functional Crop, National Institute of Crop Science, Rural Development Administration) ;
  • Oh, Se-Yun (Department of Functional Crop, National Institute of Crop Science, Rural Development Administration) ;
  • Cho, Jun-Hyun (Department of Functional Crop, National Institute of Crop Science, Rural Development Administration) ;
  • Han, Sang-Ik (Department of Functional Crop, National Institute of Crop Science, Rural Development Administration) ;
  • Lee, Seung-Sik (Advanced Radiation Technology Institute (ARTI), Korea Atomic Energy Research Institute (KAERI)) ;
  • Nam, Min-Hee (Department of Functional Crop, National Institute of Crop Science, Rural Development Administration) ;
  • Park, Dong-Soo (Department of Functional Crop, National Institute of Crop Science, Rural Development Administration)
  • 박수권 (농촌진흥청 국립식량과학원 기능성작물부) ;
  • 신동진 (농촌진흥청 국립식량과학원 기능성작물부) ;
  • 황운하 (농촌진흥청 국립식량과학원 기능성작물부) ;
  • 허연재 (농촌진흥청 국립식량과학원 기능성작물부) ;
  • 김태헌 (농촌진흥청 국립식량과학원 기능성작물부) ;
  • 오세윤 (농촌진흥청 국립식량과학원 기능성작물부) ;
  • 조준현 (농촌진흥청 국립식량과학원 기능성작물부) ;
  • 한상익 (농촌진흥청 국립식량과학원 기능성작물부) ;
  • 이승식 (한국원자력연구원 첨단방사선연구소) ;
  • 남민희 (농촌진흥청 국립식량과학원 기능성작물부) ;
  • 박동수 (농촌진흥청 국립식량과학원 기능성작물부)
  • Received : 2014.04.29
  • Accepted : 2014.06.23
  • Published : 2014.06.30
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Abstract

Rice flour is used in many food products. However, dough made from rice lacks extensibility and elasticity, making it less suitable than wheat for many food products such as bread and noodles. The high-molecular weight glutenin subunits (HMW-GS) of wheat play a crucial role in determining the processing properties of the wheat grain. This paper describes the development of marker-free transgenic rice plants expressing a wheat Glu-Dy10 gene encoding the HMG-GS from the Korean wheat cultivar 'Jokyeong' using Agrobacterium-mediated co-transformation. Two expression cassettes, consisting of separate DNA fragments containing Glu-1Dy10 and hygromycin phosphotransferase II (HPTII) resistance genes, were introduced separately into Agrobacterium tumefaciens EHA105 for co-infection. Each EHA105 strain harboring Glu-1Dy10 or HPTII was infected into rice calli at a 3: 1 ratio of Glu-1Bx7 and HPTII. Among 290 hygromycin-resistant $T_0$ plants, we obtained 29 transgenic lines with both the Glu-1Dy10 and HPTII genes inserted into the rice genome. We reconfirmed the integration of the Glu-1Dy10 gene into the rice genome by Southern blot analysis. Transcripts and proteins of the Glu-1Dy10 in transgenic rice seeds were examined by semi-quantitative RT-PCR and Western blot analysis. The marker-free plants containing only the Glu-1Dy10 gene were successfully screened in the $T_1$ generation.

쌀가루는 많은 식품 가공에 이용된다. 그러나 밀가루 반죽이 빵과 면을 포함한 많은 식품 가공 제품에 적합한 반면에, 쌀로 만든 반죽은 신장성과 탄력성이 부족하다. 고분자 글루테닌 서브유닛(HMW-GS)은 밀의 가공 적성을 결정하는데 중요한 역할을 한다. 본 연구에서, 우리는 아그로박테리움(Agrobacterium) 동시 형질전환법을 이용하여 한국 밀 품종인 '조경'으로부터 HMW-GS를 암호화하는 밀 Glu-1Dy10 유전자를 발현하는 marker-free 형질전환 벼 식물체를 개발하였다. 오직 Glu-1Dy10 유전자와 HPTII (hygromycin phosphotransferase II) 저항성 유전자만을 포함하는 분리된 DNA 조각들로 구성된 두 가지 발현 카셋트(cassettes)를 독립적으로 아그로박테리움(Agrobacterium) EHA105 에 도입하였다. Glu-1Dy10 또는 HPTII를 함유하는 EHA105 를 각각 3:1 비율로 벼 캘러스에 접종하였다. 290개의 하이그로마이신(hygromycin) 저항성 $T_0$ 식물체 중에서 우리는 벼 게놈에 Glu-1Dy10과 HPTII 유전자가 모두 삽입된 29개의 형질전환 라인을 획득하였다. 우리는 Glu-1Dy10 유전자가 벼 게놈 내로 도입된 것을 Southern blot 분석을 통해 다시 확인하였다. 형질전환 벼 종자에서 Glu-1Dy10의 전사(Transcripts)와 단백질을 semi-quantitative RT-PCR과 Western blot 분석을 통해서 확인하였다. 최종적으로, 오직 Glu-1Dy10 유전자를 갖는 marker-free 식물체를 $T_1$ 세대에서 성공적으로 선발할 수 있었다.

Keywords

Introduction

Improvement of rice quality, especially that of rice flour is of great relevance to many Asian counties, where rice is widely cultivated, and rice flour has been used for many food products. However, dough made from rice lacks extensibility and elasticity. A probable cause is lack of proteins responsible for this trait in the rice endosperm. On the other hand, dough made from wheat flour is elastic and extensible making it suitable for many food products particularly for bread [26]. Transgenic rice with improved dough functionality by transformation of wheat gluten genes, such as high and low-molecular weight glutenin subunits, gliadins maybe substitute or complement wheat flour for making bread.

Wheat flour is different from other cereal flours, including rice. The unique processing properties of wheat flour result from the unusual biomechanical properties of the gluten proteins, which form a network conferring elasticity and extensibility to the dough [5]. Gluten proteins consist of monomeric gliadins and polymeric glutenins. Gliadins are single chain molecules which form only intra-chain disulphide bonds. In contrast, the glutenin subunits form both interand intra-chain disulphide bonds. The high molecular weight glutenin subunits (HMW-GS) of wheat play an important role in determining the functional properties of wheat dough [19, 20, 27, 29].

Bread wheat contains from three to six HMW-GS genes, with tightly linked pairs of genes encoding x- and y-type subunits being present at each of the Glu-A1, Glu-B1, and Glu-D1 loci on the long arms of chromosomes 1A, 1B, and 1D, respectively [21]. Allelic differences in the HMW-GS composition result in effects on the structures and properties of the glutenin polymers and hence on bread-making quality [22, 28].

Glu-1Dy10, one of the HMW-GSs in the D1 chromosome, consists of 648 amino acids and five cysteine residues in the C-terminal domain. The central domain has an additional cysteine residue that is present close to the end of the C-terminus in the y-type subunits and, occasionally, closes to the N-terminus in the x-type subunits. The y-type subunits are highly cross-linked with x-type subunits and enhance mixing strength and tolerance of dough. In particular, HMW-GS 1Ax1 and 1Dx5+1Dy10, encoded by chromosomes 1A and 1D, respectively, are associated with strong dough and good bread-making quality.

Several HMW-GS genes have been shown to be functional when transformed into Escherichia coli [10], tobacco [23], wheat [1, 2, 5, 6] and tritordeum [24].

The genetic engineering of transgenic plants in most crop species requires the use of selectable marker genes and selective agents, such as herbicides and antibiotics in order to minimize regeneration of non-transformed tissues. However, the presence of selectable marker genes in transgenic crops destined for field cultivation and human food leads to serious public concerns about the safety of transgenic crops, even though several risk-assessment reports [14, 25] have shown that neither the genes nor their products are harmful to human or environmental health. Because combination of wheat gluten genes is important to make transgenic rice plants with good bread-making quality, transgene pyramiding of transgenic rice plants, which containing various wheat gluten genes is required. Repeated use of the same promoter and a polyadenylation signal for different selectable marker genes could result in transcriptional gene silencing [12]. Therefore, eliminating selectable marker genes is crucial for stacking multiple traits in a transgenic plant. Moreover, generating marker-free transgenic plants responds not only to public concerns over the safety of genetically engineered crops, but supports multiple transformation cycles for transgene pyramiding.

In this study, we produced marker-free transgenic rice expressing the wheat HMW-GS protein, Glu-1Dy10, without any herbicide or antibiotic resistance marker genes. The marker-free transgenic plant expressing Glu-1Dy10 gene is critical material for generating transgenic plant advanced quality processing of bread and noodle without antibiotic markers.

 

Materials and Methods

Cloning of the wheat Glu-1Dy10 glutenin gene

′Jokyeong′ (Triticum aestivum L. cv. Jokyeong) was used for cloning the Glu-1Dy10 gluenin gene. The Glu-1Dy10 gene was amplified by polymerase chain reaction (PCR) of genomic DNA using the primers Glu-1Dy10-CF (primer sequences: 5′ - AGGGTACCGAGATGGCTAAGCGGCTGG - 3′) and Glu-1Dy10-CR (primer sequences: 5′- GATCTAGATCACTGGCTAGCCGACAATG -3′), which were designed from a sequence on GenBank (accession no. X12929). The PCR temperature cycling conditions were 4 min at 94°C, followed by 35 cycles of 94°C for 30 sec, 60°C for 30 sec, 72°C for 2 min, and a final extension at 72°C for 10 min. The amplification products were separated on a 1% agarose gel and visualized with EtBr. The amplified products were sub-cloned using a TOPO TA Cloning kit for sequencing (Invitrogen, Carlsbad, CA, USA).

DNA constructs

To make a marker-free vector, we amplified promoter region of high-molecular weight glutenin gene (Genbank accession no. AY795083.1) from wheat cultivar ′Jokyeong′. And then amplified promoter was inserted into the pBTEX binary vector, which modified from pCAMBIA1300 binary vector. The HPTII expression cassette (CaMV 35S promoter- HPTII gene-CaMV 35S terminator) in the pBTEX binary vector was removed by XhoI and EcoRI restriction enzyme treatment. After klenow enzyme treatment for blunt ligation, the vector was self-ligated. Then, amplified the Glu-1Dy10 gene with the KpnI and XbaI restriction enzyme sites was constructed into pBTEX binary vectors under the control of HMW (high-molecular weight) glutenin promoter (Fig. 1, upper panel). The positive selectable marker cassette for co-transformation was used by an empty pBTEX binary vector (Fig. 1, lower panel).

Agrobacterium handling

Competent Agrobacterium tumefaciens EHA105 was transformed with Glu-1Dy10- cloned binary vector and an empty vector containing HPTII for the selectable marker using the freeze-thaw method [7]. T0 plants were selected on YEP media containing kanamycin (50 mg/l). Transformation was confirmed by PCR amplification of plasmids mini-prepped from each Agrobacterium strain [3].

Rice co-transformation

Mature seeds of Oryza sativa L. subsp. japonica var. Dongjin were used to induce callus formation on callus induction (CI) medium [N6 salts [9] with vitamins, 2.5 g/l proline, 2 mg/l 2,4-D, 0.5 g/l casamino acid, 30 g/l sucrose and 2 g/l gelrite, pH 5.7]. After 21 days of incubation in the dark at 25°C, the scutellum-derived calli were excised and preincubated on CI medium for 1 week. Agrobacterial cells were grown on YEP solid medium containing antibiotics at 25°C for 2 days. And then, agrobacterial cells were resuspended in suspension medium (N6 salts with vitamins, 2 mg/l 2,4-D, 0.5 g/l casamino acid, 30 g/l sucrose, and 10 g/l glucose, pH 5.7) with 200 μM acetosyringone as a final concentration. After two Agrobacterium cells were mixed in a 3:1 ratio of EHA105 with Glu-1Dy10 gene expressing cassette and EHA105 with HPTII gene expressing cassette, the calli were transformed by swirling in the mixture of Agrobacterium cultures for 30 min. The calli were blotted on Whatman no. 1 paper and cocultivated on the cocultivation medium (N6 salts with vitamins, 2 mg/l 2,4-D, 0.5 g/l casamino acid, 30 g/l sucrose, 10 g/l glucose, and 2 g/l gelrite, pH 5.2 with 200 μM acetosyringone as a final concentration). After 3 days, the calli were washed with liquid CI medium supplemented with 250 mg/l cefotaxime and 150 mg/l and placed on the selection medium (CI medium supplemented with 50 mg/l hygromycin, 250 mg/l cefotaxime). After selection and regeneration, the regenerated plantlets were acclimatized and grown in a greenhouse.

PCR analysis of T0 plants

PCR was performed with the GeneAmp System 9700 (Applied Biosystems, Foster City, CA, USA) with a gene-specific primer set (Glu-1Dy10; forward 5′-CGCAAGACAATATGAGCAAAC- 3′, reverse 5′-GTTGCCTTTGTCCTGTGTGCT- 3′, HPTII; forward 5′-CGCTTCTGCGGGCGATTT-3′, reverse 5′-CCCATTCGGACCGCAAGGA -3′) and EF Taq DNA polymerase (Solgent Co. Seoul, South Korea). Each reaction mixture (30 μM) consisted of 10 mM Tris-HCl (pH 9.0), 1.5 mM MgCl2, 40 mM KCl, 250 μM dNTPs, and 1 U Taq DNA polymerase. Amplified products were separated on a 1% agarose gel, stained with EtBr, and visualized with a UV illuminator.

Southern hybridization analysis

Rice genomic DNA was prepared by the CTAB extraction method [30]. Aliquots of 5 μg of purified DNA were digested with restriction endonuclease (EcoRI), size-fractionated on a 0.8% agarose gel, and the DNA was transferred to a nylon membrane through capillary blotting in 10× SSC (Gene Screen, DuPont, Wilmington, DE, USA). The blots were la-labeled using AlkPhos Direct (Amersham, GE Healthcare. Piscataway, NJ, USA) according to the manufacturer′s instructions. After hybridization, the filters were washed for 30 min at 55°C to remove unlabelled probe. Subsequently, CD-star Detection Reagent (Amersham, GE Healthcare. Piscataway, NJ, USA) was used to detect and generate signals.

RNA extraction and RT-PCR analysis

T1 generation seeds were frozen in liquid nitrogen and then ground to powder using a mortar and pestle. Total RNA was extracted using a method reported previously [33]. The isolated RNA preparations were then reverse-transcribed with oligo-dT primer and a First Strand cDNA Synthesis kit for RT-PCR (Roche Co., Basel, Switzerland) with gene-specific primers. The primers were as follows: Glu-1Dy10 forward 5′-CGCAAGACAATATGAGCAAAC- 3′, Glu-1Dy10 reverse 5′-GTTGCCTTTGTCCTGTGTGCT -3′; OsActin primers were used as internal standards for mRNA expression profiling [17, 32]. The PCR conditions consisted of initial denaturation at 94°C for 4 min, followed by 30 cycles at 94°C for 1 min, 60°C for 1 min, 72°C for 2 min, and a final extension at 72°C for 10 min. The experiments were repeated three times and all produced similar results. The OsActin control primers were 5′- GGAACTGGTATGGTCAAGGC -3′ and 5′- AGTCTCATGGATACCCGCAG -3′ [8].

Protein extraction and Western blot

T1 generation seeds were frozen in liquid nitrogen and then ground to powder using a mortar and pestle. Total storage proteins in the rice endosperm were extracted with 50mM Tris-HCl (pH 8.0) containing 2% SDS, 50% of 1-propanol and 1% of dithiothreitol, as described [4]. Amount of extracted total proteins was measured by Nanodrop Spectrophotometer (ND-1000, Thermo Fischer Scientific, Wilmington DE, USA). Western blot analysis was performed as described [18].

 

Results and Discussion

DNA construction and Agrobacterium transformation for marker-free transgenic rice

Co-transformation experiments were conducted using two expression cassettes containing separate linear DNA fragments with the Glu-1Dy10 and hygromycin resistance (HPTII) genes. The amplified Glu-1Dy10 gene from genomic DNA of Triticum aestivum cv. Jokyeong was constructed into the pBTEX marker-free vector, which was changed with the HMW promoter after removing hygromycin resistance gene (HPTII) and the cauliflower mosaic virus promoter (CaMV35S) (Fig. 1A, upper panel). An empty pBTEX vector was used as the positive selectable marker cassette for co-transformation (Fig. 1B, lower panel). The two expression binary vectors were separately introduced into A. tumefaciens EHA105 strain for plant transformation. Each binary vector was rescued from the EHA105 strain harboring Glu-1Dy10 and the HPTII, and then the HPTII and Glu-1Dy10 genes were validated by PCR analysis with specific primers.

Fig. 1.Vector constructs expressing the Glu-1Dy10 (upper panel) and hygromycin phosphotransferase II (HPTII) (lower panel) genes in the binary vectors. HMW pro, high-molecular weight promoter; OCS-ter, octopine synthase terminator; CaMV 35S, cauliflower mosaic virus promoter; 35S-ter, 35S terminator; RB, right border; LB, left border.

Generation of marker-free Glu-1Dy10 transgenic rice plants

Each EHA105 strain harboring Glu-1Dy10 expression vector or HPTII expression vector was cultured in YEP medium for plant transformation. The cultured cells were resuspended to OD600 =0.1 in AAM medium [11], and each Glu-1Dy10 and HPTII cell was added at a 3:1 ratio. These mixed cells were co-infected into rice calli. The transformed calli were selected in hygromycin medium because we co-infected EHA 105 cells containing HPTII gene to calli. We obtained 290 independent hygromycin-resistant T0 plants through Agrobacterium-mediated co-transformation system. Genomic DNA from 290 independent T0 plants was extracted and insertion of HPTII and Glu-1Dy10 genes was analyzed using PCR analysis with gene specific primers. As shown in Figure 2, HPTII gene in all of T0 plants was amplified, but no PCR products in ′Dongjin′ used as negative controls were detected. Next, we investigate the insertion of Glu-1Dy10 gene in T0 plants. Among 290 independent transgenic lines, only 29 T0 plants contained Glu-1Dy10 gene (Fig. 2). This result means that 29 transgenic lines harbored both Glu-1Dy10 and HPTII genes. And the co-transformation frequency was 10% in our experimental system (Table 1). In a previous report, co-transformation frequency in rice was about from 2% to 14% [13]. This result indicates that transformation efficiency is dependent on rice cultivar and the experimental conditions. Although the generating of marker- free plants based on the Agrobacterium-mediated co-trans-formation using two different expression cassettes was need more time consuming and effort, this method could be efficiently produce marker-free transgenic rice plants.

Fig. 2.Identification of T0 plants by gene specific primer sets. Glu-1Dy10 (upper panel) and HPTII (lower panel) genes were amplified using Glu-1Dy10 and HPTII specific primer sets, respectively. SM, molecular marker; ‘Dongjin′ (Korean rice cultivar), non-transgenic plant; 1-23, co-transformed transgenic lines. Genomic DNAs from each plant were used as the template for Glu-1Dy10 and HPTII specific amplification. The reaction products of the sample plant were analyzed by electrophoresis on a 1.0% agarose gel.

Table 1.Co-transformation efficiency calculated during regeneration in rice-transformation experiments

We performed Southern blot analysis to validate integration of Glu-1Dy10 genes and guess segregation ratio of the marker-free plant in T1 plants. One or multi signal bands were detected in 29 selected T0 plants lines (Fig. 3). These results indicating that 29 selected transgenic lines were independent transgenic rice plants.

Fig. 3.Southern hybridization analysis of Glu-1Dy10 gene from T0 plants. The 1.35 kb fragment of HMW promoter was amplified by PCR using specific primer sets as the probe.

Transcript and protein analysis of Glu-1Dy10 gene in the co-transformed rice plants

We used HMW glutenin promoter to express Glu-1Dy10 because Glu-1Dy10 expression in rice endosperm is important for rice flour quality. Total RNAs from randomly selected two-copy inserted T1 transgenic seeds (13, 16, 29 lines) were extracted, and Glu-1Dy10 gene transcript level was examined by semi-quantitative RT-PCR. The Glu-1Dy10 transcripts were successively expressed in the T1 generation transgenic seeds, whereas Glu-1Dy10 expression in ′Dongjin′ was not detected (Fig. 4). OsActin expression was used as a quantitative control. And we analyzed the protein expression of Glu-1Dy10 by Western blot with an anti x-type HMW specific antibody. The 11 transgenic plants (2, 6, 7, 9, 15, 18, 20, 22, 24, 26, 28) which were shown abnormal morphologies comparing with ′Dongjin′ were removed. After total proteins were extracted from wheat (′Jokyeong′ cultivar), ′Dongjin′ and transgenic plants, 0.5 μ g of wheat and 40 μ g of total protein extract of transgenic plants were used for SDS-PAGE. The immunospecificity of the anti- x-type HMW specific antibody was verified by in vivo experiment. Although the used antibody was x-type HMW specific, protein bands of Glu-1Dy10 were well detected in transgenic plants. However, the level of protein expression was not depended on their inserted copy number (Fig. 5). No protein bands were detected in one copy-inserted lines and muti-copies inserted lines. We guess that the expression levels of Glu-1Dy10 were too low to detect signal in case of the one-copy inserted lines. In case of Multi-copies inserted lines, this phenomenon may be related to homology- dependent gene silencing in plants [2]. Genetic engineering of plants sometimes results in transgene silencing after integration into the genome, which may relate to a defense mechanism against foreign DNA expression [15, 31]. Homology-dependent gene silencing has attracted considerable interest because it may be detrimental to genetic engineering and also because of its usefulness as a tool to study the mechanisms involved in detecting and inactivating exogenous DNA [15, 16].

Fig. 4.Transcript analysis of the Glu-1Dy10 gene from T1 seeds. RT-PCR was performed with Glu-1Dy10 T1 seed transcripts to measure Glu-1Dy10 mRNA expression. OsActin was used as a control. The reaction products of the sample plant were analyzed by electrophoresis in a 1.0% agarose gel.

Fig. 5.Protein expression analysis of Glu-1Dy10 gene from T1 seeds. Western blotting was performed with an anti x-type HMW specific antibody. Total protein extracts of 0.5 μ g of wheat and 40 μ g of transgenic plants and ‘Dongjin′ were used for SDS-PAGE. CN, copy number of the Glu-1Dy10 integrated in transgenic plants.

Selection of marker-free plants harboring Glu-1Dy10 gene in the T1 generation

To select Glu-1Dy10 marker-free plants harboring only the Glu-1Dy10 gene, 72 T1 generation seeds of the transgenic plant 13 were planted in soil and genomic DNA was extracted from leaves of plantlets after 4 weeks. Insertion of the Glu-1Dy10 and HPTII genes was investigated by PCR analysis with Glu-1Dy10 and HPTII specific primers, respectively. As shown in Fig. 6, most of the transgenic lines harbored both the Glu-1Dy10 and HPTII genes, and some inserted only the HPTII gene. However, transgenic 1, 7, 10, 14 and 21 lines contained only the Glu-1Dy10 gene (Fig. 6). This result shows that marker-free plants containing only the Glu-1Dy10 gene were successfully screened at the T1 generation. Finally, we produced marker-free transgenic rice plants harboring Glu-1Dy10 gene. This marker-free transgenic plant harboring Glu-1Dy10 will become useful material to optimize transgenic rice plants, which has advanced quality processing of bread and noodle by crossing with genetically engineered rice plants with other gluten genes.

Fig. 6.PCR analysis of T1 progenies to select marker-free transgenic plant containing Glu-1Dy10 gene. Dongjin, non-transgenic plant as negative control; 1-24, T1 progeny lines from T0 plants containing both Glu-1Dy10 and HPTII genes. The reaction products of the sample plant were analyzed by electrophoresis in a 1.0% agarose gel.

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