References
- Agrawal GK, Jwa NS, Iwahashi Y, Yonekura M (2006) Rejuvenating rice proteomics: facts, challenges, and visions. Proteomics 6:5549-5576 https://doi.org/10.1002/pmic.200600233
- Agrawal GK, Rakwal R (2006) Rice Proteomics: a cornerstone for cereal food crop proteomes. Mass Spectrom Rev 25:1-53 https://doi.org/10.1002/mas.20056
- Agrawal GK, Rakwal R (2008) Plant Proteomics: Technologies, Strategies, and Applications (Eds. GK Agrawal and R Rakwal). John Wiley & Sons, Inc., Hoboken, NJ, pp165-178
- Agrawal GK, Jwa NS, Rakwal R (2009) Rice proteomics: ending phase I and the beginning of phase II. Proteomics 9:935-963 https://doi.org/10.1002/pmic.200800594
- Agrawal GK, Jwa NS, Lebrun MH, Job D, Rakwal R (2010) Plant secretome: unlocking secrets of the secreted proteins. Proteomics 10:799-827 https://doi.org/10.1002/pmic.200900514
- Agrawal GK, Rakwal R (2011) Rice proteomics: a move toward expanded proteome coverage to comparative and functional proteomics uncovers the mysteries of rice and plant biology. Proteomics 11:1630-1649 https://doi.org/10.1002/pmic.201000696
- Edgar N, Vollmer M, Hörth P, Vad C (2004) 2D-LC/MS techniques for the identification of proteins in highly complex mixtures. Expert Rev Proteomics 1:37-46 https://doi.org/10.1586/14789450.1.1.37
- De Wolf ED, Effertz RJ, Ali S, Francl LJ (1998) Vistas of tan spot research. Can J Plant Pathol 20:349-370 https://doi.org/10.1080/07060669809500404
- Fang X, Chen W, Xin Y, Zhang H, Yan C, Yu H, Liu H, Xiao W, Wang S, Zheng G, Liu H, Jin L, Ma H, Ruan S (2012) Proteomic analysis of strawberry leaves infected with Colletorichum fragariae. J Proteomics 75:4074-4090 https://doi.org/10.1016/j.jprot.2012.05.022
- Fang X, Jost R, Finnegan PM, Barbetti MJ (2013) Comparative proteome analysis of the strawberry-Fusarium oxysporum f. sp. fragariae pathosystem reveals early activation of defense responses as a crucial determinant of host resis tance. J Proteome Res 12:1772-1788 https://doi.org/10.1021/pr301117a
- Gonzalez-Fernandez R, Prats E, Jorrin-Novo JV (2010) Proteomics of plant pathogenic fungi. J Biomed Biotech 2010:1-36
- Gunnaiah R, Kushalappa A, Duggavathi R, Fox S, Somers DJ (2012) Integrated metabolo-proteomic approach to decipher the mechanisms by which wheat QTL (Fhb1) contributes to resistance against Fusarium graminearum. PLoS ONE 7:e40695:1-15
- Harder A (2008) Sample preparation procedure for cellular fungi. In 2D PAGE: Sample preparation and fractionation. Methods Mol Biol 425:265-273 https://doi.org/10.1007/978-1-60327-210-0_21
- Haynes PA, Roberts TH (2007) Subcellular shotgun proteomics in plants: looking beyond the usual suspects. Proteomics 16:2963-2975
- Kalra A, Singh HB, Patra NK, Pandey R, Shukla RS, Kumar S (2001) The effect of leaf spot, rust and powdery mildew on yield components of nine Japanese mint (Mentha arvensis) genotypes. J Hort Sci Biotech 76:546-548
- Kim ST, Cho KS, Jang YS, Kang KY (2001) Two-dimensional electrophoretic analysis of rice proteins by polyethylene glycol fractionation for protein arrays. Electrophoresis 22:2103-2109 https://doi.org/10.1002/1522-2683(200106)22:10<2103::AID-ELPS2103>3.0.CO;2-W
- Kim ST, Kim SG, Hwang du H, Kang SY, Kim HJ, Lee BH, Lee JJ, Kang KY (2004) Proteomic analysis of pathogen-responsive proteins from rice leaves induced by rice blast fungus, Magnaporthe grisea. Proteomics 4:3569-3578 https://doi.org/10.1002/pmic.200400999
- Kim SG, Wang Y, Lee KH, Park ZY, Park J, Wu J, Kwon SJ, Lee YH, Agrawal GK, Rakwal R, Kim ST, Kang KY (2013) In-depth insight into in vivo apoplastic secretome of rice-Magnaporthe oryzae interaction. J Proteomics 78:58-71 https://doi.org/10.1016/j.jprot.2012.10.029
- Kim ST, Kim SG, Agrawal GK, Kikuchi S, Rakwal R (2014) Rice proteomics: A model system for crop improvement and food security. Proteomics 14:593-610 https://doi.org/10.1002/pmic.201300388
- Kim YM, Bouras N, Kav NNV, Strelkov SE (2010) Inhibition of photosynthesis and modification of the wheat leaf proteome by Ptr ToxB: A host-specific toxin from the fungal pathogen Pyrenophora tritici-repentis. Proteomics 10:2911-2926 https://doi.org/10.1002/pmic.200900670
- Koga H, Dohi K, Nishiuchi T, Kato T, Takahara H, Mori M, Komatsu S (2012) Proteomic analysis of susceptible rice plants expressing the whole plant-specific resistance against Magnaporthe oryzae: Involvement of a thaumatin-like protein. Physiol Mol Plant Pathol 77:60-66 https://doi.org/10.1016/j.pmpp.2011.12.001
- Kosova K, Vitamvas P, Prasil IT, Renaut J (2011) Plant proteome changes under abiotic stress - Contribution of proteomics studies to understanding plant stress response. Proteomcis 74:1301-1322
- Lee J, Koh HJ (2011) A label-free quantitative shotgun proteomics analysis of rice grain development. Proteome Sci 9:61 https://doi.org/10.1186/1477-5956-9-61
- Li H, Goodwin PH, Han Q, Huang L, Kang Z (2012) Microscopy and proteomic analysis of the non-host resistance of Oryza sativa to the wheat leaf rust fungus, Puccinia triticina f. sp. tritici. Plant Cell Rep 31:637-650 https://doi.org/10.1007/s00299-011-1181-0
- Lilley KS, Dupree P (2007) Plant organelle proteomics. Curr Opin Plant Biol 10:594-599 https://doi.org/10.1016/j.pbi.2007.08.006
- Liu J, Wang X, Mitchell T, Hu Y, Liu X, Dai L (2010) Recent progress and understanding of the molecular mechanisms of the rice-Magnaporthe oryzae interaction. Mol Plant Pathol 11:419-427 https://doi.org/10.1111/j.1364-3703.2009.00607.x
- Marra R, Li H, Barbetti MJ, Sivasithamparam K, Vinale F, Cavallo P, Lorito M (2010) Proteomic analysis of the interaction between Brassica napus cv. Surpass 400 and virulent or avirulent isolates of Leptosphaeria maculans. J Plant Pathol 92:89-101
- Maytalman D, Mert Z, Baykal AT, Inan C, Günel A, Hasancebi S (2013) Proteomic analysis of early responsive resistance proteins of wheat (Triticum aestivum) to yellow rust (Puccinia striiformis f. sp. tritici) using ProteomLab PF2D. J Plant Omics 6:24-35
- McDonald T, Sheng S, Stanley B, Chen D, Ko Y, Cole RN, Pedersen P, Van EJE (2006) Expanding the subproteome of the inner mitochondria using protein separation technologies: one- and two-dimensional liquid chromatography and twodimensional gel electrophoresis. Mol Cell Proteomics 5:2392-2411 https://doi.org/10.1074/mcp.T500036-MCP200
- Medina ML, Francisco WA (2008) Isolation and enrichment of secreted proteins from filamentous fungi. In 2D PAGE: Sample preparation and fractionation. Methods Mol Biol 425:275-285 https://doi.org/10.1007/978-1-60327-210-0_22
- Pitarch A, Nombela C, Gil C (2008) Cell wall fractionation for yeast and fungal proteomics. Method in Molecular Biology 425:217-239 https://doi.org/10.1007/978-1-60327-210-0_19
- Qi X, Niks RE, Stam P, Lindhout P (1998) Identification of QTLs for partial resistance to leaf rust (Puccinia horden) in barley. Theor Appl Genet 96:1205-1215 https://doi.org/10.1007/s001220050858
- Rampitsch C, Bykova NV, McCallum B, Beimcik (2006) Analysis of the wheat and Puccinia triticina (leaf rust) proteomes during a susceptible host‐pathogen interaction. Proteomics 6:1897-1907 https://doi.org/10.1002/pmic.200500351
- Rampitsch C, Bykova NV (2012) Proteomics and plant disease: advances in combating a major threat to the global food supply. Proteomics 12: 673-690 https://doi.org/10.1002/pmic.201100359
- Saravanan RS, Rose JK (2004) A critical evaluation of sample extraction techniques for enhanced proteomic analysis of recalcitrant plant tissues. Proteomics 4:2522-2532 https://doi.org/10.1002/pmic.200300789
- Shah P, Powell ALT, Orlando R, Bergmann C, Gutierrez-Sanchez G (2012) Proteomic analysis of ripening tomato fruit infected by Botrytis cinerea. J Proteome Res 11:2178-2192 https://doi.org/10.1021/pr200965c
- Shenton MR, Berberich T, Kamo M, Yamashita T, Taira H, Terauchi R (2012) Use of intercellular washing fluid to investigate the secreted proteome of the rice-Magnaporthe interaction. J Plant Res 125:311-316 https://doi.org/10.1007/s10265-012-0473-y
- Sinha R, Chattopadhyay S (2011) Changes in the leaf proteome profile of Mentha arvensis in response to Alternaria alternata infection. J Proteomics 74:327-336 https://doi.org/10.1016/j.jprot.2010.11.009
- Sreenivasaprasad S, Talhinhas P. (2005) Genotypic and phenotypic diversity in Colletotrichum acutatum, a cosmopolitan pathogen causing anthracnose on a wide range of hosts. Mol Plant Pathol 6:361-378 https://doi.org/10.1111/j.1364-3703.2005.00291.x
- Strelkov SE, Lamari L (2003) Host-parasite interactions in tan spot [Pyrenophora tritici-repentis] of wheat. Can J Plant Pathol 25:339-349 https://doi.org/10.1080/07060660309507089
- Talbot NJ (2003) On the trail of a cereal killer: Exploring the biology of Magnaporthe grisea. Annu Rev Microbiol 57:177-202 https://doi.org/10.1146/annurev.micro.57.030502.090957
- Tan KC. Ipcho SV, Trengove RD, Oliver P, Solomon PS (2009) Assessing the impact of transcriptomics proteomics and metabolomics on fungal phytopathology. Mol Plant Pathol 10:703-715 https://doi.org/10.1111/j.1364-3703.2009.00565.x
- Tzorzakis N, Taybi T, Antony E, Singleton I, Borland A, Barnes J (2013) Profiling shifts in protein complement in tomato fruit induced by atmpospheric ozone-enrichment and/or wound-inoculation with Botrytis cinerea. Postharvest Biol Tech 78:67-75 https://doi.org/10.1016/j.postharvbio.2012.12.005
- Zhou W, Eudes F, Laroche A (2006) Identification of differentially regulated proteins in response to a compatible interaction between the pathogen Fusarium graminearum and its host, Triticum aestivum. Proteomics 6:4599-4609 https://doi.org/10.1002/pmic.200600052