Identification of Bacteria by Sequence Analysis of 16S rRNA in Testes of Jeju Horses

제주마 고환내 세균의 16S rRNA 염기서열 분석을 이용한 동정

  • 박용상 (농촌진흥청 국립축산과학원) ;
  • 김남영 (제주대학교 수의과대학) ;
  • 한상현 (제주대학교 교육과학연구소) ;
  • 박남건 (농촌진흥청 국립축산과학원) ;
  • 고문석 (농촌진흥청 국립축산과학원) ;
  • 조원모 (농촌진흥청 국립축산과학원) ;
  • 채현석 (농촌진흥청 국립축산과학원) ;
  • 조인철 (농촌진흥청 국립축산과학원) ;
  • 조상래 (농촌진흥청 국립축산과학원) ;
  • 우제훈 (농촌진흥청 국립축산과학원) ;
  • 강태영 (제주대학교 수의과대학)
  • Published : 2014.02.28

Abstract

Many bacteria colonized in the horse semen affect quality of the sperm and some may cause infection in the mare reproductive tract and infertility of susceptible mare. This study was initiated to determine the prevalence of bacteria in testes of Jeju horses by determining rRNA sequence. The samples were swabed from the testes of nine Jeju horses (aged from 8 to 12 months after birth). Bacteria isolated from testes were identified by 16S rDNA sequencing. 1.6-kbp PCR products for 16S rRNA coding region were obtained using the universal primers. The PCR products were further purified and sequenced. Maximum similar species were found by BLAST search in the GenBank DNA database. BLAST results showed that the sequences were similar to those of Acinetobacter sp (A. schindleri, A. ursingii)., Bacillus cereus, Corynebacterium glutamicum, Escherichia coli, Gamma proteobacterium, Micrococcus luteus, Pseudomonas mendocina, Shigella sonnei, Sphingomonas sp., Staphylococcus sp (S. cohnii, S. saprophyticus, S. xylosus)., and Stenotrophomonas maltophilia. DNA sequences for 16S rRNA is provided useful informations for species identification of pathogenic microorganisms for the reproductive organs in horses.

Keywords

References

  1. Bosshard PP, Zbinden R, Abels S, Boddinghaus B, Altwegg M and Bottger EC. 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory. J Clin Microbiol 2006; 44: 1359-1366. https://doi.org/10.1128/JCM.44.4.1359-1366.2006
  2. Clarridge JE 3rd. Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases. Clin Microbiol Rev 2004; 17: 840-862. https://doi.org/10.1128/CMR.17.4.840-862.2004
  3. Hiraishi A. Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification. Lett Appl Microbiol 1992; 15: 210-213. https://doi.org/10.1111/j.1472-765X.1992.tb00765.x
  4. Klausegger A, Hell M, Berger A, Zinober K, Baier S, Jones N, W and Kofler B. Gram type-specific broad-range PCR amplification for rapid detection of 62 pathogenic bacteria. J Clin Microbiol 1999; 37: 464-466.
  5. Loomis PR. The equine frozen semen industry. Anim Reprod Sci 2001; 68: 191-200. https://doi.org/10.1016/S0378-4320(01)00156-7
  6. Ludwig W and Schleifer. Bacterial phylogeny based on 16S and 23S rRNA sequence analysis. FEMS Microbiol Rev 1994; 15: 155-173. https://doi.org/10.1111/j.1574-6976.1994.tb00132.x
  7. Maxam AM and Gilbert W. A new method for sequencing DNA. Proc Natl Acad Sci 1997; 74: 560-564.
  8. Metcalf ES. The role of international transport of equine semen on disease transmission. Anim Reprod Sci 2001; 68: 229-237. https://doi.org/10.1016/S0378-4320(01)00159-2
  9. Mollet C, Drancourt M, and Raoult D. Sequence analysis as a novel basis for bacterial identification. Mol Microbiol 1997; 26: 1005-1011. https://doi.org/10.1046/j.1365-2958.1997.6382009.x
  10. Muller Z. Fertility of frozen equine semen. J Reprod Fertil Suppl. 1982; 32: 47-51.
  11. Pace NR. A molecular view of microbial diversity and the biosphere. Science 1997; 276: 734-740. https://doi.org/10.1126/science.276.5313.734
  12. Park YS and Cho GJ. Factors affecting on the motility of semen and the pregnancy rate of artificial insemination in equine. J Emb Trans 2011; 26: 13-17.
  13. Patel JB. 16S rRNA gene sequencing for bacterial pathogen identification in the clinical laboratory. Mol Diagn 2001; 6: 313-321. https://doi.org/10.2165/00066982-200106040-00012
  14. Thorne JL, Kishino H, and Painter IS. Estimating the rate of evolutionof the rate of molecular evolution. Mol Biol Evol 1998; 15: 1647-1657. https://doi.org/10.1093/oxfordjournals.molbev.a025892
  15. Timoney PJ. The increasing significance of international trade in equids and its influence on the spread of infectious diseases. Ann N Y Acad Sci 2000; 916:55-60.