DOI QR코드

DOI QR Code

Protein Separation in Functional Rice Grains Using Two-Dimensional Gel Electrophoresis

  • Chung, Soo Im (Department of Food Science and Nutrition, Kyungpook National University) ;
  • Lee, Sang Chul (Division of Plant Biosciences, Kyungpook National University) ;
  • Kan, Mi Young (Department of Food Science and Nutrition, Kyungpook National University)
  • Received : 2013.08.08
  • Accepted : 2013.10.30
  • Published : 2013.12.30

Abstract

The proteins from functional rice cultivars (Nogwonchalbyeo, Giant embryonic, Arhyangchalbyeo, and Goamibyeo) and general white rice were extracted and separated using two-dimensional (2D) gel electrophoresis. A wide variation in the molecular weight (MW) and pH range of the expressed proteins in rice samples were observed. The green-kerneled rice (Nogwonchalbyeo) exhibited proteins with MW of 9-57 kDa and appeared at a pH range of 4-7. The Giant embryonic contained proteins with MW of 31-63 kDa and a pH range of 5-6. The aromatic glutinous rice (Arhyangchalbyeo) showed proteins with MW of 24-28 and pH of 5.8-6.8. The high-amylose rice (Goamibyeo) exhibited proteins with MW of 3-63 and pH of 5.2-5.6. The identified proteins uniquely found and highly expressed in each cultivar may have a significant role on rice functionality. The results illustrate that the 2D gel electrophoresis is a valuable method in the determination of the protein expression profiles in functional rice grains and may be useful in the identification of specific marker proteins associated with the functional property of rice.

Keywords

References

  1. Cascardo, J. C., R. A. Buzeli, R. S. Almeida, W. C. Ontoni, and E. P. Fontes. 2001. Differential expression of the soybean BiP gene family. Plant Sci. 160 : 273-281. https://doi.org/10.1016/S0168-9452(00)00384-8
  2. Chu, S. H., H. H. Lee, S. N. Ryu, and H. J. Koh. 2004. Grain characteristics and inheritance of green-kerneled rice (Oryza sativa L.). Kor. J. Breed. 36 : 222-228.
  3. Chung, S. I., C. W. Rico, S. C. Lee, and M. Y. Kang. 2012. Separation of proteins from rice grains with different eating qualities by two-dimensional gel electrophoresis. Agron. J. 104 : 49-53. https://doi.org/10.2134/agronj2011.0198n
  4. Gygi, S. P., G. L. Corthals, Y. Zhang, Y. Rochon, and R. Aebersold. 2000. Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. Proc. Natl. Acad. Sci. USA 97 : 9390-9395. https://doi.org/10.1073/pnas.160270797
  5. Kang, S. Y., I. C. Shin, D. S. Kim, G. J. Lee, J. B. Kim, D. Y. Lee, S. Y. Lee, and D. J. Lee. 2008. A new greenkerneled glutinous rice mutant variety, "Nogwonchalbyeo" developed by gamma ray irradiation. Kor. J. Breed. Sci. 40 : 303-307.
  6. Komatsu, S., H. Kajiwara, and H. Hirano. 1993. A rice protein library : a data-file of rice proteins separated by two-dimensional electrophoresis. Theor. Appl. Genet. 86 : 936-942.
  7. Komatsu, S., H. Konishi, S. Shen, and G. Yang. 2003. Rice proteomics: a step toward functional analysis of the rice genome. Mol. Cell. Proteomics 2 : 2-10. https://doi.org/10.1074/mcp.R200008-MCP200
  8. Komatsu, S., K. Kojima, K. Suzuki, K. Ozaki, and K. Higo. 2004. Rice proteome database based on two-dimensional polyacrylamide gel electrophoresis : its status in 2003. Nucleic Acid Res. 32 : D388-D392. https://doi.org/10.1093/nar/gkh020
  9. Rosenfeld, J., J. Capdevielle, J. C. Guillemot, and P. Ferrara. 1992. In-gel digestion of proteins for internal sequence analysis after one- or two-dimensional gel electrophoresis. Anal. Biochem. 203 : 173-179. https://doi.org/10.1016/0003-2697(92)90061-B
  10. Song, Y. C., S. J. Lim, J. S. Lee, H. Y. Kim, U. S. Yeo, N. B. Park, D. Y. Kwak, J. R. Kang, S. J. Yang, H. G. Hwang, B. G. Oh, H. P. Moon, and M. S. Lim. 2008. A new high amylose rice variety "Goamibyeo". Kor. J. Breed Sci. 40 : 447-451.
  11. Vorm, O., P. Roepstorff, and M. Mann. 1994. Improved resolution and very high sensitivity in MALDI-TOF of matrix surfaces made by fast evaporation. Anal. Chem. 66 : 3281-3287. https://doi.org/10.1021/ac00091a044