참고문헌
- Ahn, J.H., J. Song, B.Y. Kim, M.S. Kim, J.H. Joa, and H.Y. Weon. 2012. Characterization of the bacterial and archaeal communities in rice field soils subjected to long-term fertilization practices. J. Microbiol. 50:754-765. https://doi.org/10.1007/s12275-012-2409-6
- Babalola, O.O. 2010. Beneficial bacteria of agricultural importance. Biotechnol. Lett. 32:1559-1570. https://doi.org/10.1007/s10529-010-0347-0
- Berg, G., A. Krechel, M. Ditz, R.A. Sikora, A. Ulrich, and J. Hallmann. 2005. Endophytic and ectophytic potato-associated bacterial communities differ in structure and antagonistic function against plant pathogenic fungi. FEMS Microbiol. Ecol. 51:215-229. https://doi.org/10.1016/j.femsec.2004.08.006
- Chun, J., K.Y. Kim, J.H. Lee, and Y. Choi. 2010. The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer. BMC Microbiol. 10:101. https://doi.org/10.1186/1471-2180-10-101
- Compant, S., C. Clement, and A. Sessitsch. 2010. Plant growthpromoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization. Soil Biol. Biochem. 42:669-678. https://doi.org/10.1016/j.soilbio.2009.11.024
- Edgar, R.C., B.J. Haas, J.C. Clemente, C. Quince, and R. Knight. 2011. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics. 27:2194-2200. https://doi.org/10.1093/bioinformatics/btr381
- Jones, R.T., M.S. Robeson, C.L. Lauber, M. Hamady, R. Knight, and N. Fierer. 2009. A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. ISME J. 3:442-453. https://doi.org/10.1038/ismej.2008.127
- Kim, J.H. and J.K. Lee. 2011. Identification and characterization of an endophytic strain of Streptomyces from rice roots (Orysa sativa L.). Kor. J. Microbiol. 47:375-380.
- Kim, M.S., Y.H. Kim, B.K. Hyun, J.E. Yang, Y.S. Zhang, H.B. Yun, Y.K. Sonn, Y.J. Lee, and S.K. Ha. 2011. Rice yield and changes of available silicate in paddy soils from long-term application of chemical fertilizers and soil amendments. Korean J. Soil Sci. Fert. 44:1118-1123. https://doi.org/10.7745/KJSSF.2011.44.6.1118
- Kim, O.S., Y.J. Cho, K. Lee, S.H. Yoon, M. Kim, H. Na, S.C. Park, Y.S. Jeon, J.H. Lee, H. Yi, S. Won, and J. Chun. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62:716-721. https://doi.org/10.1099/ijs.0.038075-0
- Lian, J., Z. Wang, and S. Zhou. 2008. Response of endophytic bacterial communities in banana tissue culture plantlets to Fusarium wilt pathogen infection. J. Gen. Appl. Microbiol. 54:83-92. https://doi.org/10.2323/jgam.54.83
- Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Yadhukumar, A. Buchner, T. Lai, S. Steppi, G. Jobb, W. Forster, I. Brettske, S. Gerber, A.W. Ginhart, O. Gross, S. Grumann, S. Hermann, R. Jost, A. Konig, T. Liss, R. Lussmann, M. May, B. Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, N. Stuckmann, A. Vilbig, M. Lenke, T. Ludwig, A. Bode, and K.H. Schleifer. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371. https://doi.org/10.1093/nar/gkh293
- Manter, D.K., J.A. Delgado, D.G. Holm, and R.A. Stong. 2010. Pyrosequencing reveals a highly diverse and cultivarspecific bacterial endophyte community in potato roots. Microb. Ecol. 60:157-166. https://doi.org/10.1007/s00248-010-9658-x
- Mercado-Blanco, J. and P.A. Bakker. 2007. Interactions between plants and beneficial Pseudomonas spp.: exploiting bacterial traits for crop protection. Antonie van Leeuwenhoek. 92:367-389. https://doi.org/10.1007/s10482-007-9167-1
- Park, M., H. Lee, S.G. Hong, and O.S. Kim. 2012. Endophytic bacterial diversity of antartic moss, Sanionia uncinata. Antarct. Sci. 4:1-4.
- Park, S.Y., S.H. Yang, S.K. Choi, J.G. Kim, and S.H. Park. 2007. Isolation and characterization of endophytic bacteria from rice root cultivated in Korea. Kor. J. Microbiol. Biotechnol. 35:1-10.
- Pruesse, E., C. Quast, K. Knittel, B.M. Fuchs, W. Ludwig, J. Peplies, and F.O. Glockner. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35:7188-7196. https://doi.org/10.1093/nar/gkm864
- Qin, S., J. Li, H.H. Chen, G.Z. Zhao, W.Y. Zhu, C.L. Jiang, L.H. Xu, and W.J. Li. 2009. Isolation, diversity, and antimicrobial activity of rare actinobacteria from medicinal plants of tropical rain forests in xishuangbanna, China. Appl. Environ. Microbiol. 75:6176-6186. https://doi.org/10.1128/AEM.01034-09
- Quince, C., A. Lanzen, R.J. Davenport, and P.J. Turnbaugh. 2011. Removing noise from pyrosequenced amplicons. BMC Bioinformatics. 12:38. https://doi.org/10.1186/1471-2105-12-38
- Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
- Saravanakumar, D. and R. Samiyappan. 2007. ACC deaminase from Pseudomonas fluorescens mediated saline resistance in groundnut (Arachis hypogea) plants. J. Appl. Microbiol. 102:1283-1292. https://doi.org/10.1111/j.1365-2672.2006.03179.x
- Schloss, P.D., S.L. Westcott, T. Ryabin, J.R. Hall, M. Hartmann, E.B. Hollister, R.A. Lesniewski, B.B. Oakley, D.H. Parks, C.J. Robinson, J.W. Sahl, B. Stres, G.G. Thallinger, D.J. Van Horn, and C.F. Weber. 2009. Introducing mothur: open-source, platform-independent, communitysupported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75:7537-7541. https://doi.org/10.1128/AEM.01541-09
- Shin, D.S., M.S. Park, S. Jung, M.S. Lee, K.H. Lee, K.S. Bae, and S.B. Kim. 2007. Plant growth-promoting potential of endophytic bacteria isolated from roots of coastal sand dune plants. J. Microbiol. Biotechnol. 17:1361-1368.
- Stockwell, V.O. and J.P. Stack. 2007. Using Pseudomonas spp. for integrated biological control. Phytopathology. 97:244-249. https://doi.org/10.1094/PHYTO-97-2-0244
- Strobel, G., B. Daisy, U. Castillo, and J. Harper. 2004. Natural products from endophytic microorganisms. J. Nat. Prod. 67:257-268. https://doi.org/10.1021/np030397v
- Taghavi, S., D. van der Lelie, A. Hoffman, Y.B. Zhang, M.D. Walla, J. Vangronsveld, L. Newman, and S. Monchy. 2010. Genome sequence of the plant growth promoting endophytic bacterium Enterobacter sp. 638. PLoS Genet. 6:e1000943. https://doi.org/10.1371/journal.pgen.1000943
- Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739. https://doi.org/10.1093/molbev/msr121
- Ulrich, K., A. Ulrich, and D. Ewald. 2008. Diversity of endophytic bacterial communities in poplar grown under field conditions. FEMS Microbiol. Ecol. 63:169-180. https://doi.org/10.1111/j.1574-6941.2007.00419.x