DOI QR코드

DOI QR Code

Lack of Replication of Genetic Association with Body Mass Index Detected by Genome-wide Association Study

  • Lee, Hae-In (Asan Institute for Life Sciences, University of Ulsan College of Medicine) ;
  • Kim, Jae-Jung (Asan Institute for Life Sciences, University of Ulsan College of Medicine) ;
  • Park, Tae-Sung (Department of Statistics, College of Natural Science, Seoul National University) ;
  • Kim, Kyung-A (Department of Statistics, Sookmyung Women's University) ;
  • Lee, Jong-Eun (DNA Link) ;
  • Cho, Yoon-Shin (Center for Genome Science, National Institute of Health) ;
  • Lee, Jong-Young (Center for Genome Science, National Institute of Health) ;
  • Han, Bok-Ghee (Center for Genome Science, National Institute of Health) ;
  • Lee, Jong-Keuk (Asan Institute for Life Sciences, University of Ulsan College of Medicine)
  • Accepted : 2010.12.18
  • Published : 2011.06.30

Abstract

Obesity provokes many serious human diseases, including various cardiovascular diseases and diabetes. Body mass index (BMI) is a highly heritable trait that is broadly used to diagnose obesity. To identify genetic loci associated with obesity in Asians, we conducted a genome-wide association study (GWAS) of a population of Korean adults (n=6,742, age 40~60 years) and detected six BMI risk loci (TNR, FAM124B, RGS12, NFE2L3, MC4R and FTO) having p< $1{\times}10^{-5}$. However, in the replication study, only melanocortin 4 receptor gene (MC4R) (rs9946888, p=$4.58{\times}10^{-7}$) was replicated with marginal significance (p<0.05) in the second cohort (n=5,102, age 40~60 years). This study indicates that each locus associated with BMI has very weak genetic effect.

Keywords

References

  1. Atwood, L.D., Heard-Costa, N.L., Cupples, L.A., Jaquish, C.E., Wilson, P.W., and D'Agostino, R.B. (2002). Genomewide linkage analysis of body mass index across 28 years of the Framingham Heart Study. Am. J. Hum. Genet. 71, 1044-1050. https://doi.org/10.1086/343822
  2. Bogardus, C. (2009). Missing heritability and GWAS utility. Obesity 17, 209-210. https://doi.org/10.1038/oby.2008.613
  3. Cho, Y.S., Go, M.J., Kim, Y.J., Heo, J.Y., Oh, J.H., Ban, H.J., Yoon, D., Lee, M.H., Kim, D.J., Park, M., Cha, S.H., Kim, J.W., Han, B.G., Min, H., Ahn, Y., Park, M.S., Han, H.R., Jang, H.Y., Cho, E.Y., Lee, J.E., Cho, N.H., Shin, C., Park, T., Park, J.W., Lee, J.K., Cardon, L., Clarke, G., McCarthy, M.I., Lee, J.Y., Lee, J.K., Oh, B., and Kim, H.L. (2009). A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits. Nat. Genet. 41, 527-534. https://doi.org/10.1038/ng.357
  4. Haslam, D.W., and James, W.P. (2005). Obesity. Lancet 366, 1197-1209. https://doi.org/10.1016/S0140-6736(05)67483-1
  5. Hinney, A., Bettecken, T., Tarnow, P., Brumm, H., Reichwald, K., Lichtner, P., Scherag, A., Nguyen, T.T., Schlumberger, P., Rief, W., Vollmert, C., Illig, T., Wichmann, H.E., Schäfer, H., Platzer, M., Biebermann, H., Meitinger, T., and Hebebrand, J. (2006). Prevalence, spectrum, and functional characterization of melanocortin-4 receptor gene mutations in a representative population-based sample and obese adults from Germany. J. Clin. Endocrinol. Metab. 91, 1761-1769. https://doi.org/10.1210/jc.2005-2056
  6. Hofker, M., and Wijmenga, C. (2009). A supersized list of obesity genes. Nat. Genet. 41, 139-140. https://doi.org/10.1038/ng0209-139
  7. Huszar, D., Lynch, C.A., Fairchild-Huntress, V., Dunmore, J.H., Fang, Q., Berkemeier, L.R., Gu, W., Kesterson, R.A., Boston, B.A., Cone, R.D., Smith, F.J., Campfield, L.A., Burn, P., and Lee, F. (1997). Targeted disruption of the melanocortin-4 receptor results in obesity in mice. Cell 88, 131-141. https://doi.org/10.1016/S0092-8674(00)81865-6
  8. Janssen, I., and Mark, A.E. (2007). Elevated body mass index and mortality risk in the elderly. Obes. Rev. 8, 41-59.
  9. Kublaoui, B.M., and Zinn, A.R. (2006). MC4R Mutationsweight before screening!. J. Clin. Endocrinol. Metab. 91, 1671-1672. https://doi.org/10.1210/jc.2006-0546
  10. Maes, H.H., Neale, M.C., and Eaves, L.J. (1997). Genetic and environmental factors in relative body weight and human adiposity. Behav. Genet. 27, 325-351. https://doi.org/10.1023/A:1025635913927
  11. Manolio, T.A., Collins, F.S., Cox, N.J., Goldstein, D.B., Hindorff, L.A., Hunter, D.J. McCarthy, M.I., Ramos, E.M., Cardon, L.R., Chakravarti, A., Cho, J.H., Guttmacher, A.E., Kong, A., Kruglyak, L., Mardis, E., Rotimi, C.N., Slatkin, M., Valle, D., Whittemore, A.S., Boehnke, M., Clark, A.G., Eichler, E.E., Gibson, G., Haines, J.L., Mackay, T.F., McCarroll, S.A., and Visscher, P.M. (2009). Finding the missing heritability of complex diseases. Nature 461, 747-753. https://doi.org/10.1038/nature08494
  12. Marti, A., Corbalan, M.S., Forga, L., Martinez, J.A., Hinney, A., and Hebebrand, J. (2003). A novel nonsense mutation in the melanocortin-4 receptor associated with obesity in a Spanish population. Int. J. Obes. Relat. Metab. Disord. 27, 385-388. https://doi.org/10.1038/sj.ijo.0802244
  13. Meyre, D., Delplanque, J., Chevre, J.C., Lecoeur, C., Lobbens, S., Gallina, S. Durand, E., Vatin, V., Degraeve, F., Proenca, C., Gaget, S., Korner, A., Kovacs, P., Kiess, W., Tichet, J., Marre, M., Hartikainen, A.L., Horber, F., Potoczna, N., Hercberg, S., Levy-Marchal, C., Pattou, F., Heude, B., Tauber, M., McCarthy, M.I., Blakemore, A.I., Montpetit, A., Polychronakos, C., Weill, J., Coin, L.J., Asher, J., Elliott, P., Jarvelin, M.R., Visvikis-Siest, S., Balkau, B., Sladek, R., Balding, D., Walley, A., Dina, C., and Froguel, P. (2009). Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations. Nat. Genet. 41, 157-159. https://doi.org/10.1038/ng.301
  14. Romero-Corral, A., Somers, V.K., Sierra-Johnson, J., Thomas, R.J., Collazo-Clavell, M.L., Korinek, J., Allison, T.G., Batsis, J.A., Sert-Kuniyoshi, F.H., and Lopez-Jimenez, F. (2008). Accuracy of body mass index in diagnosing obesity in the adult general population. Int. J. Obes (Lond). 32, 959-966. https://doi.org/10.1038/ijo.2008.11
  15. Thorleifsson, G., Walters, G.B., Gudbjartsson, D.F., Steinthorsdottir, V., Sulem, P., Helgadottir, A., Styrkarsdottir, U., Gretarsdottir, S., Thorlacius, S., Jonsdottir, I., Jonsdottir, T., Olafsdottir, E.J., Olafsdottir, G.H., Jonsson, T., Jonsson, F., Borch-Johnsen, K., Hansen, T., Andersen, G., Jorgensen, T., Lauritzen, T., Aben, K.K., Verbeek, A.L., Roeleveld, N., Kampman, E., Yanek, L.R., Becker, L.C., Tryggvadottir, L., Rafnar, T., Becker, D.M., Gulcher, J., Kiemeney, L.A., Pedersen, O., Kong, A., Thorsteinsdottir, U., and Stefansson, K. (2009). Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity. Nat. Genet. 41, 18-24. https://doi.org/10.1038/ng.274
  16. WHO Expert Consultation. (2004). Appropriate body-mass index for Asian populations and its implications for policy and intervention strategies. Lancet 363, 157-163. https://doi.org/10.1016/S0140-6736(03)15268-3
  17. Willer, C.J., Speliotes, E.K., Loos, R.J., Li, S., Lindgren, C.M., Heid, I.M., Berndt, S.I., Elliott, A.L., Jackson, A.U., Lamina, C., Lettre, G., Lim, N., Lyon, H.N., McCarroll, S.A., Papadakis, K., Qi, L., Randall, J.C., Roccasecca, R.M., Sanna, S., Scheet, P., Weedon, M.N., Wheeler, E., Zhao, J.H., Jacobs, L.C., Prokopenko, I., Soranzo, N., Tanaka, T., Timpson, N.J., Almgren, P., Bennett, A., Bergman, R.N., Bingham, S.A., Bonnycastle, L.L., Brown, M., Burtt, N.P., Chines, P., Coin, L., Collins, F.S., Connell, J.M., Cooper, C., Smith, G.D., Dennison, E.M., Deodhar, P., Elliott, P., Erdos, M.R., Estrada, K., Evans, D.M., Gianniny, L., Gieger, C., Gillson, C.J., Guiducci, C., Hackett, R., Hadley, D., Hall, A.S., Havulinna, A.S., Hebebrand, J., Hofman, A., Isomaa, B., Jacobs, K.B., Johnson, T., Jousilahti, P., Jovanovic, Z., Khaw, K.T., Kraft, P., Kuokkanen, M., Kuusisto, J., Laitinen, J., Lakatta, E.G., Luan, J., Luben, R.N., Mangino, M., McArdle, W.L., Meitinger, T., Mulas, A., Munroe, P.B., Narisu, N., Ness, A.R., Northstone, K., O'Rahilly, S., Purmann, C., Rees, M.G., Ridderstråle, M., Ring, S.M., Rivadeneira, F., Ruokonen, A., Sandhu, M.S., Saramies, J., Scott, L.J., Scuteri, A., Silander, K., Sims, M.A., Song, K., Stephens, J., Stevens, S., Stringham, H.M., Tung, Y.C., Valle, T.T., Van Duijn, C.M., Vimaleswaran, K.S., Vollenweider, P., Waeber, G., Wallace, C., Watanabe, R.M., Waterworth, D.M., Watkins, N.; Wellcome Trust Case Control Consortium, Witteman, J.C., Zeggini, E., Zhai, G., Zillikens, M.C., Altshuler, D., Caulfield, M.J., Chanock, S.J., Farooqi, I.S., Ferrucci, L., Guralnik, J.M., Hattersley, A.T., Hu, F.B., Jarvelin, M.R., Laakso, M., Mooser, V., Ong, K.K., Ouwehand, W.H., Salomaa, V., Samani, N.J., Spector, T.D., Tuomi, T., Tuomilehto, J., Uda, M., Uitterlinden, A.G., Wareham, N.J., Deloukas, P., Frayling, T.M., Groop, L.C., Hayes, R.B., Hunter, D.J., Mohlke, K.L., Peltonen, L., Schlessinger, D., Strachan, D.P., Wichmann, H.E., McCarthy, M.I., Boehnke, M., Barroso, I., Abecasis, G.R., and Hirschhorn, J.N.; Genetic Investigation of ANthropometric Traits Consortium. (2009). Six new loci associated with body mass index highlight a neuronal influence on body weight regulation. Nat. Genet. 41, 25-34. https://doi.org/10.1038/ng.287