참고문헌
- Alizadeh, A.A., Eisen, M.B., Davis, R.E., Ma, C., Lossos, I.S., Rosenwald, A., Boldrick, J.C., Sabet, H., Tran, T., Yu, X., et al. (2000). Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403, 503-511. https://doi.org/10.1038/35000501
- Golub, T.R., Slonim, D.K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J.P., Coller, H., Loh, M.L., Downing, J.R., Caligiuri, M.A., et al. (1999). Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286, 531-537. https://doi.org/10.1126/science.286.5439.531
- Tibshirani, R., Hastie, T., Narasimhan, B., and Chu, G. (2002). Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc Natl Acad Sci U S A 99, 6567-6572. https://doi.org/10.1073/pnas.082099299
- Tusher, V.G., Tibshirani, R., and Chu, G. (2001). Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 98, 5116-5121. https://doi.org/10.1073/pnas.091062498
- Chuang, H.Y., Lee, E., Liu, Y.T., Lee, D., and Ideker, T. (2007). Network-based classification of breast cancer metastasis. Mol Syst Biol 3, 140.
- Lee, E., Chuang, H.Y., Kim, J.W., Ideker, T., and Lee, D. (2008). Inferring pathway activity toward precise disease classification. PLoS Comput Biol 4, e1000217. https://doi.org/10.1371/journal.pcbi.1000217
- Taylor, I.W., Linding, R., Warde-Farley, D., Liu, Y., Pesquita, C., Faria, D., Bull, S., Pawson, T., Morris, Q., and Wrana, J.L. (2009). Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nat Biotechnol 27, 199-204. https://doi.org/10.1038/nbt.1522
- Fung, M.M., Chu, Y.L., Fink, J.L., Wallace, A., and McGuire, K.L. (2005). IL-2- and STAT5-regulated cytokine gene expression in cells expressing the Tax protein of HTLV-1. Oncogene 24, 4624-4633. https://doi.org/10.1038/sj.onc.1208507
- Haider, A.S., Peters, S.B., Kaporis, H., Cardinale, I., Fei, J., Ott, J., Blumenberg, M., Bowcock, A.M., Krueger, J.G., and Carucci, J.A. (2006). Genomic analysis defines a cancer-specific gene expression signature for human squamous cell carcinoma and distinguishes malignant hyperproliferation from benign hyperplasia. J Invest Dermatol 126, 869-881. https://doi.org/10.1038/sj.jid.5700157
- Sosman, J.A., and Puzanov, I. (2006). Molecular targets in melanoma from angiogenesis to apoptosis. Clin Cancer Res 12, 2376s-2383s. https://doi.org/10.1158/1078-0432.CCR-05-2558
- Riker, A.I., Enkemann, S.A., Fodstad, O., Liu, S., Ren, S., Morris, C., Xi, Y., Howell, P., Metge, B., Samant, R.S., et al. (2008). The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis. BMC Med Genomics 1, 13. https://doi.org/10.1186/1755-8794-1-13
- Xu, L., Shen, S.S., Hoshida, Y., Subramanian, A., Ross, K., Brunet, J.P., Wagner, S.N., Ramaswamy, S., Mesirov, J.P., and Hynes, R.O. (2008). Gene expression changes in an animal melanoma model correlate with aggressiveness of human melanoma metastases. Mol Cancer Res 6, 760-769. https://doi.org/10.1158/1541-7786.MCR-07-0344
- Prasad, T.S., Kandasamy, K., and Pandey, A. (2009). Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology. Methods Mol Biol 577, 67-79. https://doi.org/10.1007/978-1-60761-232-2_6
- Gribskov, M., and Robinson, N.L. (1996). Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching. Comput Chem 20, 25-33. https://doi.org/10.1016/S0097-8485(96)80004-0