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Isozyme Analysis and Relationships Among Three Species in Malaysian Trichoderma Isolates

  • Siddiquee, Shafiquzzaman (Department of Biology, Faculty of Science, Universiti Putra Malaysia) ;
  • Tan, Soon-Guan (Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia) ;
  • Yusof, Umi-Kalsom (Department of Biology, Faculty of Science, Universiti Putra Malaysia)
  • Received : 2010.04.18
  • Accepted : 2010.06.11
  • Published : 2010.09.28

Abstract

Isozyme and protein electrophoresis data from mycelial extracts of 27 isolates of Trichoderma harzianum, 10 isolates of T. aureoviride, and 10 isolates of T. longibrachiatum from Southern Peninsular Malaysia were investigated. The eight enzyme and a single protein pattern systems were analyzed. Three isozyme and total protein patterns were shown to be useful for the detection of three Trichoderma species. The isozyme and protein data were analyzed using the Nei and Li Dice similarity coefficient for pairwise comparison between individual isolates, species isolate group, and for generating a distance matrix. The UPGMA cluster analysis showed a higher degree of relationship between T. harzianum and T. aureoviride than to T. longibrachiatum. These results suggested that the T. harzianum isolates had high levels of genetic variation compared with the other isolates of Trichoderma species.

Keywords

References

  1. Berg, E. E. and J. L. Hamrick. 1997. Quantification of genetic diversity at allozyme loci. Can. J. Forest Res. 27: 415-424. https://doi.org/10.1139/x96-195
  2. Bissett, J. 1984. A revision of the genus Trichoderma. I. Sect. Longibrachiatum sect. nov. Can. J. Bot. 62: 924-931. https://doi.org/10.1139/b84-131
  3. Bissett, J. 1991. A revision of the genus Trichoderma. II. Infrageneric classification. Can. J. Bot. 69: 2357-2372. https://doi.org/10.1139/b91-297
  4. Bissett, J. 1991. A revision of the genus Trichoderma. III. Sect. Pachybasium. Can. J. Bot. 69: 2373-2417. https://doi.org/10.1139/b91-298
  5. Bissett, J. 1991. A revision of the genus Trichoderma. IV. Additional notes on section Longibrachiatum. Can. J. Bot. 69: 2418-2420. https://doi.org/10.1139/b91-299
  6. Bissett, J. 1992. Trichoderma atroviride. Can. J. Bot. 70: 639-641. https://doi.org/10.1139/b92-082
  7. Byrne, M. and S. H. James. 1991. Genetic diversity in the cycad Macrozamia riedlei. Heredity 67: 35-39. https://doi.org/10.1038/hdy.1991.62
  8. Campa, A. 1990. Biological roles of plant peroxidases: Known and potential function, pp. 25-50. In J. Everse, K. E. Everse, and M. B. Grisham (eds.). Peroxidase in Chemistry and Biology, Vol. II. CRC Press, Boca Raton, Finland.
  9. Gams, W. and J. Bissett. 1998. Morphology and identification of Trichoderma, pp. 3-34. In C. P. Kubicek and G. E. Harman (eds.). Trichoderma and Gliocladium, Vol. 1. Basic Biology, Taxonomy and Genetics. Taylor and Francis Ltd, London.
  10. Gonzalez-Astorga, J., A. P. Vovides, M. M. Ferrer, and C. Iglesias. 2003. Population genetics of Dioon edule Lindl. (Zamiaceae, Cycadales): Biogeographical and evolutionary implications. Biol. J. Linnean Soc. 80: 457-467. https://doi.org/10.1046/j.1095-8312.2003.00257.x
  11. Goodwin, S. B., R. E. Schneider, and W. E. Fry. 1995. Use of cellulose-acetate electrophoresis for rapid identification of allozyme genotypes of Phytophthora infestans. Plant Dis. 79: 1181-1185. https://doi.org/10.1094/PD-79-1181
  12. Harman, G. E., C. R. Howell, A. Viterbo, I. Chet, and M. Lorito. 2004. Trichoderma species - opportunistic, avirulent plant symbionts. Nat. Rev. Microbiol. 2: 43-56. https://doi.org/10.1038/nrmicro797
  13. Harris, H. and D. A. Hopkinson. 1976. Handbook of Enzyme Electrophoresis in Human Genetics. North-Holland Publishing Company.
  14. Hartl, D. L. and A. G. Clark. 1997. Principles of Population Genetics, 3rd Ed. Sunderland, Sinauer Associates Press.
  15. Hedrick, P. W. 2000. Genetics of Populations, 2nd Ed. Jones and Bartlett Publishers, Massachusetts.
  16. Hunter, M. and C. L. Markert. 1957. Histochemical demonstration of enzymes separated by zone electrophoresis in starch gels. Science 125: 1294-1295.
  17. Ilias, G. N. M. 2000. Trichoderma Pers. Ex. Fr. and its efficacy as a biological control agent of basal stem rot of oil palms (Elaeis guineensis). Ph.D Thesis, Universiti Putra Malaysia.
  18. Karpinska, B., M. Karlsson, H. Schinkel, S. Streller, K. Suss, M. Melzer, and G. Wingsle. 2001. A novel superoxide dismutase with a high isoelectric point in higher plant. Expression, regulation and protein localization. Plant Physiol. 126: 1668-1677. https://doi.org/10.1104/pp.126.4.1668
  19. Klaas, M. 1998. Applications and impact of molecular markers on evolutionary and diversity studies in Allium. Plant Breeding 117: 297-308. https://doi.org/10.1111/j.1439-0523.1998.tb01946.x
  20. Laday, M. and A. Szecsi. 2001. Distinct electrophoretic isoenzyme profiles of Fusarium graminearum and closely related species. Syst. Appl. Microbiol. 24: 67-75. https://doi.org/10.1078/0723-2020-00009
  21. Lange, O. and M. Schifino-Wittmann. 2000. Isozyme variation in wild and cultivated species of the genus Trifolium L. (Leguminosae). Ann. Bot. 86: 339-345. https://doi.org/10.1006/anbo.2000.1190
  22. Lasker, B. A. 2002. Evaluation of performance of four genotyping methods for studying the genetic epidemiology of Aspergillus fumigatus isolates. Clin. Microbiol. 40: 2886-2992. https://doi.org/10.1128/JCM.40.8.2886-2892.2002
  23. Levene, H. 1949. On a matching problem arising in genetics. Ann. Mathemat. Stat. 20: 91-94. https://doi.org/10.1214/aoms/1177730093
  24. Lewontin, R. C. and J. L. Hubby. 1966. A molecular approach to the study of genetic heterozygosity in natural populations II. Genetics 54: 595-609.
  25. Lorito, M., S. L. Woo, and F. Scala. 2004. Le biotecnologie utili alla difesa sostenibile delle piante: I funghi. Agroindustria 3: 181-195.
  26. Markert, C. L. and F. Moller. 1959. Multiple forms of enzymes: Tissue, ontogenetic and species specific patterns. Proc. Nat. Acad. Sci. U.S.A. 45: 753-763. https://doi.org/10.1073/pnas.45.5.753
  27. Moore, G. A. and R. E. Durham. 1996. Molecular markers, pp. 105-140. In F. A. Hammerschlag and R. E. Litz (eds.). Biotechnology of Perennial Fruit Crops. University Press, Cambridge, U.K.
  28. Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Nat. Acad. Sci. U.S.A. 70: 3321-3323. https://doi.org/10.1073/pnas.70.12.3321
  29. Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590.
  30. Nei, M. and W. H. Lei. 1979. Mathematical model for studying genetic variations in terms of restriction endonucleases. Proc. Nat. Acad. Sci. U.S.A. 76: 5269-5273. https://doi.org/10.1073/pnas.76.10.5269
  31. Pasteur, N., G. Pasyeur, F. Bonhomme, J. Catalan, and J. Britton-Davidian. 1988. Genetic interpretation of gels, pp. 31-48. In: Practical Isozyme Genetics. John Wiley and Sons, Ellis Horwood.
  32. Prakash, S., R. C. Lewontin, and J. L. Hubby. 1969. A molecular approach to the study of generic heterozygosity in natural populations. IV. Patterns of genetic variation in central, marginal and isolated populations of Drosophila pseudoobscura. Genetics 61: 841-858.
  33. Rohlf, F. J. 1997. NTSYS-pc Numerical Taxonomy and Multivariate Analysis System. Exeter Software, Setauket, New York, U.S.A.
  34. Rosendahl, S. and S. Banke. 1998. Use of isozymes in fungal taxonomy and population studies, pp. 107-120. In: Handbook in Applied Mycology, Vol. 6. Chemical Fungal Taxonomy.
  35. Samuels, G. J., O. Petrini, and S. Manguin. 1994. Morphological and macromolecular characterization of Hypocrea schweinitzii and its Trichoderma anamorph. Mycologia 86: 421-435. https://doi.org/10.2307/3760575
  36. Shalini, K. P. Narayan, Lata, and A. S. Kotasthane. 2006. Genetic relatedness among Trichoderma isolates inhibiting a pathogenic fungi Rhizoctonia solani. Afr. J. Biotechnol. 5: 580-584.
  37. Shaw, C. R. and R. Prasad. 1970. Starch gel electrophoresis of enzymes - a compilation of recipes. J. Biochem. Genet. 4: 297-320. https://doi.org/10.1007/BF00485780
  38. Siegel, S. M., J. Chen, W. Kottenmeier, K. Clark, B. Z. Siegel, and H. Chang. 1982. Reduction in peroxidase in Cucumis brassica and other seedlings cultured in saline waters. Phytochemistry 21: 539-542. https://doi.org/10.1016/0031-9422(82)83136-1
  39. Smith, B. J. and K. Sivasithamparam. 2000. Isozymes of Ganoderma species from Australia. Mycol. Res. 104: 952-961. https://doi.org/10.1017/S0953756200002446
  40. Sneath, P. H. A. and R. R. Sokal. 1973. Numerical Taxonomy, p 573. Freeman, San Francisco.
  41. Stasz, T. E., K. Nixon, G. E. Harman, N. F. Weeden, and A. Kuter. 1989. Evaluation of phenetic species and phylogenetic relationships in the genus Trichoderma by cladistic analysis of isozyme polymorphism. Mycologia 81: 391-403. https://doi.org/10.2307/3760077
  42. Szekeres, A., M. Laday, L. Kredics, J. Varga, Z. Antal, L. Hatvani, L. Manczinger, C. Vagvolgyi, and E. Nagy. 2006. Rapid identification of clinical Trichoderma longibrachiatum isolates by cellulose-acetate electrophoresis-mediated isoenzyme analysis. Eur. Soc. Clin. Microbiol. Infect. Dis. 12: 369-375. https://doi.org/10.1111/j.1469-0691.2005.01356.x
  43. Turner, D., W. Kovacs, and K. Kuhls. 1997. Biogeography and phenotypic variation in Trichoderma sect. Longibrachiatum and associated Hypocrea species. Mycol. Res. 101: 449-459. https://doi.org/10.1017/S0953756296002845
  44. Weeden, N. F. and J. F. Wendel. 1989. Genetics of plant isozymes, pp. 46-72. In D. E. Soltis, P. S. Soltis (eds.). Isozymes in Plant Biology. Dioscorides Press, Oregon.
  45. Weir, B. S. 1990. Genetic Data Analysis. Sinauer Associates, Sunderland, Massachusetts.
  46. Weir, B. S. and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of a population's structure. Evolution 38: 1358-1370. https://doi.org/10.2307/2408641
  47. Whitt, G. S. 1981. Evolution of isozyme loci and their differential regulation, pp. 271-289. In G. G. E. Scudder and J. L. Reveal (eds.). Evolution Today: Proceedings of the 2nd International Congress of Systematic and Evolutionary Biology. Hunt Institute of Botany Documentation, Carnegie-Mellon University, Pittsburgh.
  48. Wright, S. 1978. Evolution and the Genetics of Populations, Vol. IV, Variability Within and Among Natural Populations. University of Chicago Press, Chicago, IL.
  49. Yeh, F. C. and R. Yang. 1999. Microsoft Windows-based Freeware for Population Genetic Analysis (POPGENE version 1.31). University of Alberta, Edmonton, Canada.
  50. Zamir, D. and I. CHET. 1985. Application of enzyme electrophoresis for the identification of isolates in Trichoderma harzianum. Can. J. Microbiol. 31: 578-580. https://doi.org/10.1139/m85-108

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