References
- C. W. Cotman, D. H. Cribbs, and K. H. Kahler, 'Toward Establishing Neural Networks in Culture,' in Enabling Technologies for Cultured Neural Networks, D. A. Stenger and T. M. McKenna, Eds. San Diego, USA: Academic Press, 1994, pp. 3-22
- M. Taketani and M. Baudry, Advances in Network Electrophysiology: Using Multi-Electrode Array. New York, USA: Springer, 2006.
- C. A. J. Thomas, P. A. Springer, G. E. Loeb, Y. Berwald-Netter, and L. M. Okun, 'A miniature microelectrode array to monitor the bioelectric activity of cultured cells,' Exp. Cell Res., vol. 74, pp. 61-66, 1972 https://doi.org/10.1016/0014-4827(72)90481-8
- G. W. Gross, 'Simultaneous single unit recording in vitro with a photoetched laser deinsulated gold multimicroelectrode surface,' IEEE Trans. Biomed. Eng., vol. 26, pp. 273-279, May 1979 https://doi.org/10.1109/TBME.1979.326402
- J. Pine, 'Recording action potentials from cultured neurons with extracellular microcircuit electrodes,' J. Neurosci. Methods, vol. 2, pp. 19-31, 1980/2 1980 https://doi.org/10.1016/0165-0270(80)90042-4
- J. L. Novak and B. C. Wheeler, 'Recording from the Aplysia abdominal ganglion with a planar microelectrode array,' IEEE Trans. Biomed. Eng., vol. 33, pp. 196-202, February 1986
- S. A. Boppart, B. C. Wheeler, and C. S. Wallace, 'A flexible perforated microelectrode array for extended neural recordings,' IEEE Trans. Biomed. Eng., vol. 39, pp. 37-42, 1992 https://doi.org/10.1109/10.108125
- U. Egert, B. Schlosshauer, S. Fennrich, W. Nisch, M. Fejtl, T. Knott, T. Müller, and H. Hammerle, 'A novel organotypic long-term culture of the rat hippocampus on substrate-integrated multielectrode array,' Brain Research Protocols, vol. 2, pp. 229-242, 1998 https://doi.org/10.1016/S1385-299X(98)00013-0
- K. Mathieson, W. Cunningham, J. Marchal, J. Melone, M. Horn, V. O'Shea, K. M. Smith, A. Litke, E. J. Chichilnisky, and M. Rahman, 'Fabricating high-density microarrays for retinal recording,' Microelectron. Eng., vol. 67-68, pp. 520-527, 2003/6 2003 https://doi.org/10.1016/S0167-9317(03)00109-6
- G. W. Gross, W. Y. Wen, and J. W. Lin, 'Transparent indium-tin oxide electrode patterns for extracellular, multisite recording in neuronal cultures,' J. Neurosci. Methods, vol. 15, pp. 243-252, 1985/0 1985 https://doi.org/10.1016/0165-0270(85)90105-0
- B. C. Wheeler and J. L. Novak, 'Current source density estimation using microelectrode array data from the hippocampal slice preparation,' IEEE Trans. Biomed. Eng., vol. 33, pp. 1204-1212, December 1986 https://doi.org/10.1109/TBME.1986.325701
- D. A. Borkholder, J. Bao, N. I. Maluf, E. R. Perl, and G. T Kovacs, 'Microelectrode arrays for stimulation of neural slice preparations,' J. Neurosci. Methods, vol. 77, pp. 61-6, Nov 7 1997 https://doi.org/10.1016/S0165-0270(97)00112-X
- Y. Jimbo, H. P. C. Ronbinson, and A. Kawana, 'Strengthening of synchronized activity by tetanic stimulation in cortical cultures: Application of planar electrode arrays,' IEEE Trans. Biomed. Eng., vol. 45, pp. 1297-1304, November 11 1998 https://doi.org/10.1109/10.725326
- H. Oka, K. Shimono, R. Ogawa, H. Sugihara, and M. Taketani, 'A new planar multielectrode array for extracellular recording: application to hippocampal acute slice,' J. Neurosci. Methods, vol. 93, pp. 61-67, 1999/10/30 1999 https://doi.org/10.1016/S0165-0270(99)00113-2
- J. R. Buitenweg, W. L. Rutten, E. Marani, S. K. Polman, and J. Ursum, 'Extracellular detection of active membrane currents in the neuron-electrode interface,' J. Neurosci. Methods, vol. 115, pp. 211-221, Apr 15 2002 https://doi.org/10.1016/S0165-0270(02)00021-3
- M. O. Heuschkel, M. Fejtl, M. Raggenbass, D. Bertrand, and P. Renaud, 'A three-dimensional multi-electrode array for multisite stimulation and recording in acute brain slices,' J. Neurosci. Methods, vol. 114, pp. 135-148, 2002/3/15 2002 https://doi.org/10.1016/S0165-0270(01)00514-3
- T. B. DeMarse, D. A. Wagenaar, A. W. Blau, and S. M. Potter, 'The Neurally Controlled Animat: Biological Brains Acting with Simulated Bodies,' Autonomous Robots, vol. 11, pp. 305-310, 2001 https://doi.org/10.1023/A:1012407611130
- G. T. A. Kovac, 'Introduction to the theory, design, and modeling of thin film microelectrodes for neural interfaces,' in Enabling Technologies for Cultured Neural Networks, D. A. Stenger and T. M. McKenna, Eds. San Diego, CA: Academic Press, 1994, pp. 121-165
- J. C. Chang, G. J. Brewer, and B. C. Wheeler, 'Microelectrode array recordings of patterned hippocampal neurons for four weeks,' Biomed. Microdevices, vol. 2, pp. 245-253, 2000 https://doi.org/10.1023/A:1009946920296
- J. van Pelt, P. S. Wolters, M. A. Corner, W. L. Rutten, and G. J. Ramakers, 'Long-term characterization of firing dynamics of spontaneous bursts in cultured neural networks,' IEEE Trans. Biomed. Eng., vol. 51, pp. 2051-62, Nov 2004 https://doi.org/10.1109/TBME.2004.827936
- S. I. Morefield, E. W. Keefer, K. D. Chapman, and G. W. Gross, 'Drug evaluations using neuronal networks cultured on microelectrode arrays,' Biosensors Bioelectron., vol. 15, pp. 383-396, 2000/10 2000 https://doi.org/10.1016/S0956-5663(00)00095-6
- S. M. Potter and T. B. DeMarse, 'A new approach to neural cell culture for long-term studies,' J. Neurosci. Methods, vol. 110, pp. 17-24, 2001/9/30 2001 https://doi.org/10.1016/S0165-0270(01)00412-5
- D. A. Wagenaar, J. Pine, and S. M. Potter, 'Effective parameters for stimulation of dissociated cultures using multi-electrode arrays,' J. Neurosci. Methods, vol. 138, pp. 27-37, 2004/9/30 2004 https://doi.org/10.1016/j.jneumeth.2004.03.005
- M. E. Ruaro, P. Bonifazi, and V. Torre, 'Toward the neurocomputer: image processing and pattern recognition with neuronal cultures,' IEEE Trans. Biomed. Eng., vol. 52, pp. 371-83, Mar 2005 https://doi.org/10.1109/TBME.2004.842975
- Y. Nam, J. C. Chang, B. C. Wheeler, and G. J. Brewer, 'Goldcoated microelectrode array with thiol linked self-assembled monolayers for engineering neuronal cultures,' IEEE Trans. Biomed. Eng., vol. 51, pp. 158-165, 2004 https://doi.org/10.1109/TBME.2003.820336
- Y. Nam, D. W. Branch, and B. C. Wheeler, 'Epoxy-silane linking of biomolecules is simple and effective for patterning neuronal cultures,' Biosens. Bioelectron., vol. 22, pp. 589-97, Dec 15 2006 https://doi.org/10.1016/j.bios.2006.01.027
- H. Golan, K. Mikenberg, V. Greenberger, and M. Segal, 'GABA withdrawal modifies network activity in cultured hippocampal neurons,' Neural Plas., vol. 7, pp. 31-42, 2000 https://doi.org/10.1155/NP.2000.31
- D. M. Sokal, R. Mason, and T. L. Parker, 'Multi-neuronal recordings reveal a differential effect of thapsigargin on bicuculline- or gabazine-induced epileptiform excitability in rat hippocampal neuronal networks,' Neuropharmacology, vol. 39, pp. 2408-17, Sep 2000 https://doi.org/10.1016/S0028-3908(00)00095-2
- I. Suzuki, Y. Sugio, Y. Jimbo, and K. Yasuda, 'Stepwise pattern modification of neuronal network in photo-thermally-etched agarose architecture on multi-electrode array chip for individualcell- based electrophysiological measurement,' Lab on a Chip, vol. 5, pp. 241-7, Mar 2005 https://doi.org/10.1039/b406885h
- J. V. Selinger, J. J. Pancrazio, and G. W. Gross, 'Measuring synchronization in neuronal networks for biosensor applications,' Biosensors Bioelectron., vol. 19, pp. 675-683, 2004/2/15 2004 https://doi.org/10.1016/S0956-5663(03)00267-7
- Y. Jimbo, A. Kawana, P. Parodi, and V. Torre, 'The dynamics of a neuronal culture of dissociated cortical neurons of neonatal rats,' Biol. Cybern., vol. 83, pp. 1-20, 2000 https://doi.org/10.1007/PL00007970
- D. A. Wagenaar, R. Madhavan, J. Pine, and S. M. Potter, 'Controlling bursting in cortical cultures with closed-loop multi-electrode stimulation,' The Journal of Neuroscience, vol. 25, pp. 680-8, Jan 19 2005 https://doi.org/10.1523/JNEUROSCI.4209-04.2005
- R. Segev, Y. Shapira, M. Benveniste, and E. Ben-Jacob, 'Observation and modeling of synchronized bursting in two-dimensional neural network,' Physical Review E, vol. 64, 2001
- G. Shahaf and S. Marom, 'Learning in networks of cortical neurons,' The Journal of Neuroscience, vol. 21, pp. 8782-8788, November 15 2001
- C. D. James, A. J. Spence, N. M. Dowell-Mesfin, R. J. Hussain, K. L. Smith, H. G. Craighead, M. S. Isaacson, W. Shain, and J. N. Turner, 'Extracellular recordings from patterned neuronal networks using planar microelectrode arrays,' IEEE Trans. Biomed. Eng., vol. 51, pp. 1640-1648, 2004 https://doi.org/10.1109/TBME.2004.827252
- Y. Nam and B. C. Wheeler, 'Multichannel recording and stimulation of neuronal cultures grown on microstamped poly- D-lysine,' in the 26th Annual International Conference of the IEEE Engineering In Medicine And Biology Society, San Francisco, CA, 2004
- Y. Jimbo, N. Kasai, K. Torimitsu, T. Tateno, and H. Robinson, 'A System for MEA-Based Multisite Stimulation,' IEEE Trans. Biomed. Eng., vol. 50, pp. 241-248, 2004 https://doi.org/10.1109/TBME.2002.805470
- Y. Nam, E. A. Brown, J. D. Ross, R. A. Blum, B. C. Wheeler, and S. P. DeWeerth, 'A retrofitted neural recording system with a novel stimulation IC to monitor early neural responses from a stimulating electrode,' J. Neurosci. Methods, vol. 178, pp. 99-102, Mar 30 2009 https://doi.org/10.1016/j.jneumeth.2008.11.017
- B. Eversmann, M. Jenkner, F. Hofmann, C. Paulus, R. Brederlow, B. Holzapfl, P. Fromherz, M. Merz, M. Brenner, M. Schreiter, R. Gabl, K. Plehnert, M. Steinhauser, G. Eckstein, D. Schmitt- Landsiedel, and R. Thewes, 'A 128 CMOS Biosensor Array for Extracellular Recording of Neural Activity,' IEEE Journal of Solid-State Circuits, vol. 38, pp. 2306-2317, 2003. https://doi.org/10.1109/JSSC.2003.819174
- W. Dabrowski, P. Grybos, and A. M. Litke, 'A low noise multichannel integrated circuit for recording neuronal signals using microelectrode arrays,' Biosensors Bioelectron., vol. 19, pp. 749-761, 2004/2/15 2004 https://doi.org/10.1016/j.bios.2003.08.005
- F. Heer, W. Franks, A. Blau, S. Taschini, C. Ziegler, A. Hierlemann, and H. Baltes, 'CMOS microelectrode array for the monitoring of electrogenic cells,' Biosensors Bioelectron., vol. 20, pp. 358-366, 2004/9/15 2004 https://doi.org/10.1016/j.bios.2004.02.006
- L. Berdondini, P. D. van der Wal, O. Guenat, N. F. de Rooij, M. Koudelka-Hep, P. Seitz, R. Kaufmann, P. Metzler, N. Blanc, and S. Rohr, 'High-density electrode array for imaging in vitro electrophysiological activity,' Biosensors Bioelectron., vol. 21, pp. 167-174, 2005/7/15 2005 https://doi.org/10.1016/j.bios.2004.08.011
- E. Hulata, R. Segev, and E. Ben-Jacob, 'A method for spike sorting and detection based on wavelet packets and Shannon's mutual information,' J. Neurosci. Methods, vol. 117, pp. 1-12, 2002/5/30 2002 https://doi.org/10.1016/S0165-0270(02)00032-8
- K. H. Kim and S. J. Kim, 'A wavelet-based method for action potential detection from extracellular neural signal recording with low signal-to-noise ratio,' IEEE Trans. Biomed. Eng., vol. 50, pp. 999-1011, Aug 2003 https://doi.org/10.1109/TBME.2003.814523
- K. H. Kim and S. J. Kim, 'Neural spike sorting under nearly 0-dB signal-to-noise ratio using nonlinear energy operator and artificial neural-network classifier,' IEEE Trans. Biomed. Eng., vol. 47, pp. 1406-11, Oct 2000 https://doi.org/10.1109/10.871415
- B. C. Wheeler, 'Automatic Discrimination of Single Units,' in Methods for Neural Ensemble Recordings, M. A. L. Nicolelis, Ed. New York: CRC, 1999, pp. 61-78
- S. Marom and G. Shahaf, 'Development, learning and memory in large random networks of cortical neurons: lessons beyond anatomy,' Q. Rev. Biophys., vol. 35, pp. 63-87, Feb 2002
- G. W. Gross, B. K. Rhoades, H. M. Azzazy, and M. C. Wu, 'The use of neuronal networks on multielectrode arrays as biosensors,' Biosensors Bioelectron., vol. 10, pp. 553-67, Summer 1995 https://doi.org/10.1016/0956-5663(95)96931-N
- R. Madhavan, Z. C. Chao, and S. M. Potter, 'Spontaneous bursts are better indicators of tetanus-induced plasticity than responses to probe stimuli,' in the 2nd International IEEE EMBS Conference on Neural Engineering, Arlington, Virginia, 2005
- R. Segev, I. Baruchi, E. Hulata, and E. Ben-Jacob, 'Hidden neuronal correlations in cultured networks,' Phys. Rev. Lett., vol. 92, p. 118102, Mar 19 2004 https://doi.org/10.1103/PhysRevLett.92.118102
- Y. Jimbo, T. Tateno, and H. Robinson, 'Simultaneous Induction of Pathway-Specific Potentiation and Depression in Networks of Cortical Neurons,' Biophys. J., vol. 76, pp. 670-678, Feb. 1999 1999 https://doi.org/10.1016/S0006-3495(99)77234-6
- D. Eytan, N. Brenner, and S. Marom, 'Selective adaptation in networks of cortical neurons,' The Journal of Neuroscience, vol. 23, pp. 9349-56, Oct 15 2003
- P. C. Letourneau, 'Cell-to-Substratum Adhesion and Guidance of Axonal Elongation,' Dev. Biol., vol. 44, pp. 92-101, 1975 https://doi.org/10.1016/0012-1606(75)90379-6
- D. Kleinfeld, K. H. Kahler, and P. E. Hockberger, 'Controlled outgrowth of dissociated neurons on patterned substrates,' The Journal of Neuroscience, vol. 8, pp. 4098-4120, 1988
- A. Kumar and G. M. Whitesides, 'Features of gold having micrometer to centimeter dimensions can be formed through a combination of stamping with an elastomeric stamp and an alkanethiol ``ink'' followed by chemical etching,' Appl. Phys. Lett., vol. 63, pp. 2002-2004, 1993/10/04/ 1993. https://doi.org/10.1063/1.110628
- A. Bernard, E. Delamarche, S. Heinz, M. Bruno, H. R. Bosshard, and H. Biebuyck, 'Printing Patterns of Proteins,' Langmuir, vol. 14, pp. 2225-2229, 1998 https://doi.org/10.1021/la980037l
- D. W. Branch, B. C. Wheeler, G. J. Brewer, and D. E. Leckband, 'Long-term maintenance of patterns of hippocampal pyramidal cells on substrates of polyethylene glycol and microstamped polylysine,' IEEE Trans. Biomed. Eng., vol. 47, pp. 290-300, March 2000 https://doi.org/10.1109/10.827289
- J. C. Chang, 'Technologies for and electrophysiological studies of structured, living, neuronal networks on microelectrode array,' in Elect. and Comp. Eng Urbana, IL: University of Illinois, 2002
- C. D. James, R. C. Davis, L. Kam, H. G. Craighead, M. Isaacson, J. N. Turner, and W. Shain, 'Patterned Protein Layers on Solid Substrates by Thin Stamp Microcontact Printing,' Langmuir, vol. 14, pp. 741-744, 1998 https://doi.org/10.1021/la9710482
- M. Scholl, C. Sprössler, M. Denyer, M. Krause, K. Nakajima, A. Maelicke, W. Knoll, and A. Offenhäusser, 'Ordered networks for rat hippocampal neurons attached to silicon oxide surfaces,' J. Neurosci. Methods, vol. 104, pp. 65-75, 2000 https://doi.org/10.1016/S0165-0270(00)00325-3
- J. L. Tan, J. Tien, and C. S. Chen, 'Microcontact printing of proteins on mixed self-assembled monolayers,' Langmuir, vol. 18, pp. 519-523, 2002 https://doi.org/10.1021/la011351+
- D. W. Branch, J. M. Corey, J. A. Weyhenmeyer, G. J. Brewer, and B. C. Wheeler, 'Microstamp patterns of biomolecules for highresolution neuronal networks,' Med Biol Eng Comput, vol. 36, pp. 135-141, Jan 1998 https://doi.org/10.1007/BF02522871
- B. Ilic and H. Craighead, 'Topographical patterning of chemically sensitive biological materials using a polymer-based dry lift off,' Biomed. Microdevices, vol. 2, pp. 371-322, 2000
- A. Folch, B. H. Jo, O. Hurtado, D. J. Beebe, and M. Toner, 'Microfabricated elastomeric stencils for micropatterning cell cultures,' J. Biomed. Mater. Res., vol. 52, pp. 346-53, Nov 2000 https://doi.org/10.1002/1097-4636(200011)52:2<346::AID-JBM14>3.0.CO;2-H
- C. Wyart, C. Ybert, L. Bourdieu, C. Herr, C. Prinz, and D. Chatenay, 'Constrained synaptic connectivity in functional mammalian neuronal networks grown on patterned surfaces,' J. Neurosci. Methods, vol. 117, pp. 123-131, 2002/6/30 2002 https://doi.org/10.1016/S0165-0270(02)00077-8
- J. Vielmetter, B. Stolze, F. Bonhoeffer, and C. Stuermer, 'In vitro assay to test differential substrate affinities of growing axons and migratory cells,' Exp. Brain Res., vol. 81, pp. 283-287, 1990
- N. Li Jeon, H. Baskaran, S. K. Dertinger, G. M. Whitesides, L. Van de Water, and M. Toner, 'Neutrophil chemotaxis in linear and complex gradients of interleukin-8 formed in a microfabricated device,' Nat. Biotechnol., vol. 20, pp. 826-30, Aug 2002
- A. M. Taylor, M. Blurton-Jones, S. W. Rhee, D. H. Cribbs, C. W. Cotman, and N. L. Jeon, 'A microfluidic culture platform for CNS axonal injury, regeneration and transport,' Nat Methods, vol. 2, pp. 599-605, Aug 2005 https://doi.org/10.1038/nmeth777
- G. J. Brewer, J. R. Torricelli, E. K. Evege, and P. J. Price, 'Optimized survival of hippocampal neurons in B27-supplemented Neurobasal, a new serum-free medium combination,' J. Neurosci. Res., vol. 35, pp. 567-576, Aug 1 1993 https://doi.org/10.1002/jnr.490350513
- A. A. Oliva, C. D. James, C. E. Kingman, H. G. Craighead, and G. A. Banker, 'Patterning Axonal Guidance Molecules Using a Novel Strategy for Microcontact Printing,' Neurochem. Res., vol. 28, pp. 1639-1648, 2003/11// 2003 https://doi.org/10.1023/A:1026052820129
- J. M. Corey, B. C. Wheeler, and G. J. Brewer, 'Micrometer resolution silane-based patterning of hippocampal neurons: Critical variables in photoresist and laser ablation processes for substrate fabrication,' IEEE Trans. Biomed. Eng., vol. 43, pp. 944-955, September 1996 https://doi.org/10.1109/10.532129
- J. M. Corey, B. C. Wheeler, and G. J. Brewer, 'Compliance of hippocampal neurons to patterned substrate networks,' J. Neurosci. Res., vol. 30, pp. 300-307, 1991 https://doi.org/10.1002/jnr.490300204
- W. Ma, Q.-Y. Liu, D. R. Jung, P. Manos, J. J. Pancrazio, A. E. Schaffner, J. L. Barker, and D. A. Stenger, “Central neuronal synapse formation on micropatterned surfaces,” Dev. Brain Res., vol. 111, pp. 231-243, 1998 https://doi.org/10.1016/S0165-3806(98)00142-4
- M. S. Ravenscroft, K. E. Bateman, K. M. Schffer, H. M. Schessler, D. R. Jung, T. W. Schneider, C. B. Montgomery, T. L. Custer, A. E. Schaffner, Q.-Y. Liu, Y. X. Li, J. L. Barker, and J. J. Hickman, 'Developmental neurobiology implications from fabrication and analysis of hippocampal neuronal networks on patterned silane-modified surfaces,' J. Am. Chem. Soc., vol. 120, pp. 12169-12177, 1998 https://doi.org/10.1021/ja973669n
- M. Amiji and K. Park, 'Prevention of protein adsorption and platelet adhesion on surfaces by PEO/PPO/PEO triblock copolymers,' Biomaterials, vol. 13, pp. 682-690, 1992 https://doi.org/10.1016/0142-9612(92)90128-B
- M. Matsuzawa, T. Tabata, W. Knoll, and M. Kano, “Formation of hippocampal synapses on patterned substrates of a lamininderived synthetic peptide,” Eur. J. Neurosci., vol. 12, pp. 903-910, 2000 https://doi.org/10.1046/j.1460-9568.2000.00977.x
- A. K. Vogt, F. D. Stefani, A. Best, G. Nelles, A. Yasuda, W. Knoll, and A. Offenhausser, 'Impact of micropatterned surfaces on neuronal polarity,' J. Neurosci. Methods, vol. 134, pp. 191-198, 2004/4/30 2004 https://doi.org/10.1016/j.jneumeth.2003.11.004
- D. A. Heller, V. Garga, K. J. Kelleher, T. C. Lee, S. Mahbubani, L. A. Sigworth, T. R. Lee, and M. A. Rea, 'Patterned networks of mouse hippocampal neurons on peptide-coated gold surfaces,' Biomaterials, vol. 26, pp. 883-9, Mar 2005 https://doi.org/10.1016/j.biomaterials.2004.03.029
- Y. Nam, G. J. Brewer, and B. C. Wheeler, 'Development of astroglial cells in patterned neuronal cultures,' J. Biomater. Sci. Polym. Ed., vol. 18, pp. 1091-100, 2007 https://doi.org/10.1163/156856207781494430
- Q.-Y. Liu, M. Coulombe, J. Dumm, K. M. Shaffer, A. E. Schaffner, J. L. Barker, J. J. Pancrazio, D. A. Stenger, and W. Ma, 'Synaptic connectivity in hippocampal neuronal networks cultured on micropatterned surfaces,' Dev. Brain Res., vol. 12, pp. 223-231, 2000
- J. C. Chang, G. J. Brewer, and B. C. Wheeler, 'Modulation of neural network activity by patterning,' Biosensors Bioelectron., vol. 16, pp. 527-533, 2001 https://doi.org/10.1016/S0956-5663(01)00166-X
- J. C. Chang, G. J. Brewer, and B. C. Wheeler, 'Neuronal network structuring induces greater neuronal activity through enhanced astroglial development,' J Neural Eng, vol. 3, pp. 217-26, Sep 2006 https://doi.org/10.1088/1741-2560/3/3/004