References
- Arahira, M., V. H. Nong, K. Udaka, and C. Fukazawa. 2000. Purification, molecular cloning and ethylene-inducible expression of a soluble-type epoxide hydrolase from soybean (Glycine max [L.] Merr.). Eur. J. Biochem. 267: 2649-2657 https://doi.org/10.1046/j.1432-1327.2000.01276.x
- Arand, M., H. Hemmer, H. Durk, J. Baratti, A. Archelas, R. Furstoss, and F. Oesch. 1999. Cloning and molecular characterization of a soluble epoxide hydrolase from Aspergillus niger that is related to mammalian microsomal epoxide hydrolase. Biochem. J. 344: 273-280 https://doi.org/10.1042/0264-6021:3440273
- Arand, M., H. Wagner, and F. Oesch. 1996. Asp333, Asp495, and His523 form the catalytic triad of rat soluble epoxide hydrolase. J. Biol. Chem. 271: 4223-4229 https://doi.org/10.1074/jbc.271.8.4223
- Archelas, A. and R. Furstoss. 1997. Synthesis of enantiopure epoxides through biocatalytic approaches. Annu. Rev. Microbiol. 51: 491-525 https://doi.org/10.1146/annurev.micro.51.1.491
- Archelas, A. and R. Furstoss. 2001. Synthetic applications of epoxide hydrolases. Curr. Opin. Chem. Biol. 5: 112-119 https://doi.org/10.1016/S1367-5931(00)00179-4
- Bhatnagar, T., K. M. Manoj, and J. C. Baratti. 2001. A spectrophotometric method to assay epoxide hydrolase activity. J. Biochem. Biophys. Methods 50: 1-13 https://doi.org/10.1016/S0165-022X(01)00162-2
- Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72: 248-254 https://doi.org/10.1016/0003-2697(76)90527-3
- Falany, C. N., P. McQuiddy, and C. B. Kasper. 1987. Structure and organization of the microsomal xenobiotic epoxide hydrolase gene. J. Biol. Chem. 262: 5924-5930
- Giovannoni, S. J. and U. Stingl. 2005. Molecular diversity and ecology of microbial plankton. Nature 437: 343-348 https://doi.org/10.1038/nature04158
- Hwang, S. H., H. J. Hyun, B. J. Lee, Y. S. Park, C. Y. Choi, J. Han, and H. Joo. 2006. Screening from the genome database: Novel epoxide hydrolase from Caulobacter crescentus. J. Microbiol. Biotechnol. 16: 32-36
- Hwang, Y.-O., S. G. Kang, J.-H. Woo, K. K. Kwon, T. Sato, E. Y. Lee, M. S. Han, and S.-J. Kim. 2008. Screening enantioselective epoxide hydrolase activities from marine microorganisms: Detection of activities in Erythrobacter spp. Marine Biotechnol. (in press)
- Janssen, D. B., F. Pries, J. van der Ploeg, B. Kazemier, P. Terpstra, and B. Witholt. 1989. Cloning of 1,2-dichloroethane degradation genes of Xanthobacter autotrophicus GJ10 and expression and sequencing of the dhlA gene. J. Bacteriol. 171: 6791-6799 https://doi.org/10.1128/jb.171.12.6791-6799.1989
- Kim, J.-T., S. G. Kang, J.-H. Woo, J.-H. Lee, B. C. Jeong, and S.-J. Kim. 2007. Screening and its potential application of lipolytic activity from a marine environment: Characterization of a novel esterase from Yarrowia lipolytica CL180. Appl. Microbiol. Biotechnol. 74: 820-828 https://doi.org/10.1007/s00253-006-0727-5
- Kim, Y. J., H. S. Lee, S. S. Bae, J. H. Jeon, J. K. Lim, Y. Cho, et al. 2007. Cloning, purification, and characterization of a new DNA polymerase from a hyperthermophilic archaeon, Thermococcus sp. NA1. J. Microbiol. Biotechnol. 17: 1090-1097
- Knehr, M., H. Thomas, M. Arand, T. Gebel, H. D. Zeller, and F. Oesch. 1993. Isolation and characterization of a cDNA encoding rat liver cytosolic epoxide hydrolase and its functional expression in Escherichia coli. J. Biol. Chem. 268: 17623-17627
- Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5: 150-163 https://doi.org/10.1093/bib/5.2.150
- Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685 https://doi.org/10.1038/227680a0
- Lim, J. K., H. S. Lee, Y. J. Kim, S. S. Bae, J. H. Jeon, S. G. Kang, and J.-H. Lee. 2007. Critical factors to high thermostability of an alpha-amylase from hyperthermophilic archaeon Thermococcus onnurineus NA1. J. Microbiol. Biotechnol. 17: 1242-1248
- Misawa, E., C. K. Chion, I. V. Archer, M. P. Woodland, N. Y. Zhou, S. F. Carter, D. A. Widdowson, and D. J. Leak. 1998. Characterisation of a catabolic epoxide hydrolase from a Corynebacterium sp. Eur. J. Biochem. 253: 173-183 https://doi.org/10.1046/j.1432-1327.1998.2530173.x
-
Nardini, M. and B. W. Dijkstra. 1999.
$\alpha$ /$\beta$ hydrolase fold enzymes: The family keeps growing. Curr. Opin. Struct. Biol. 9: 732-737 https://doi.org/10.1016/S0959-440X(99)00037-8 -
Ollis, D. L., E. Cheah, M. Cygler, B. Dijkstra, F. Frolow, S. M. Franken, et al. 1992. The
$\alpha$ /$\beta$ hydrolase fold. Protein Eng. 5: 197-211 https://doi.org/10.1093/protein/5.3.197 - Oppenheimer, C. H. and C. E. ZoBell. 1952. The growth and viability of sixty-three species of marine bacteria as influenced by hydrostatic pressure. J. Mar. Res. 11: 10-18
- Park, S.-Y., J.-T. Kim, S. G. Kang, J.-H. Woo, J.-H. Lee, H.-T. Choi, and S.-J. Kim. 2007. A new esterase showing similarity to putative dienelactone hydrolase from a strict marine bacterium, Vibrio sp. GMD509. Appl. Microbiol. Biotechnol. 77: 107-115 https://doi.org/10.1007/s00253-007-1134-2
- Rink, R., M. Fennema, M. Smids, U. Dehmel, and D. B. Janssen. 1997. Primary structure and catalytic mechanism of the epoxide hydrolase from Agrobacterium radiobacter AD1. J. Biol. Chem. 272: 14650-14657 https://doi.org/10.1074/jbc.272.23.14650
- Rink, R., J. H. L. Spelberg, R. J. Pieters, J. Kingma, M. Nardini, R. M. Kellogg, B. W. Dijkstra, and D. B. Janssen. 1999. Mutation of tyrosine residues involved in the alkylation half reaction of epoxide hydrolase from Agrobacterium radiobacter AD1 results in improved enantioselectivity. J. Am. Chem. Soc. 121: 7417-7418 https://doi.org/10.1021/ja990501o
- Rink, R., J. Kingma, J. H. Spelberg, and D. B. Janssen. 2000. Tyrosine residues serve as proton donor in the catalytic mechanism of epoxide hydrolase from Agrobacterium radiobacter. Biochemistry 39: 5600-5613 https://doi.org/10.1021/bi9922392
- Sambrook, J. and D. W. Russell. 2001. Molecular Cloning: A Laboratory Manual, 3rd Ed. Vol 2, pp. 8.65-8.71. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
- Stapleton, A., J. K. Beetham, F. Pinot, J. E. Garbarino, D. R. Rockhold, M. Friedman, B. D. Hammock, and W. R. Belknap. 1994. Cloning and expression of soluble epoxide hydrolase from potato. Plant J. 6: 251-258 https://doi.org/10.1046/j.1365-313X.1994.6020251.x
- Straathof, A. J. J. and J. A. Jongejan. 1997. The enantiomeric ratio: Origin, determination and prediction. Enzyme Microb. Tech. 21: 559-571 https://doi.org/10.1016/S0141-0229(97)00066-5
- Strausberg, R. L., E. A. Feingold, L. H. Grouse, J. G. Derge, R. D. Klausner, F. S. Collins, et al. 2002. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc. Natl. Acad. Sci. USA 99: 16899-16903
- Thompson, J. D., D. G. Higgin, and T. J. Gibson. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positionspecific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680 https://doi.org/10.1093/nar/22.22.4673
- Tokunaga, M., J. F. Larrow, F. Kakiuchi, and E. N. Jacobsen. 1997. Asymmetric catalysis with water: Efficient kinetic resolution of terminal epoxides by means of catalytic hydrolysis. Science 277: 936-938 https://doi.org/10.1126/science.277.5328.936
- van Loo, B., J. Kingma, M. Arand, M. G. Wubbolts, and D. B. Janssen. 2006. Diversity and biocatalytic potential of epoxide hydrolases identified by genome analysis. Appl. Environ. Microbiol. 72: 2905-2917 https://doi.org/10.1128/AEM.72.4.2905-2917.2006
- van Loo, B., J. H. L. Spelberg, J. Kingma, T. Sonke, M. G. Wubbolts, and D. B. Janssen. 2004. Directed evolution of epoxide hydrolase from A. radiobacter toward higher enantioselectivity by error-prone PCR and DNA shuffling. Chem. Biol. 11: 981-990 https://doi.org/10.1016/j.chembiol.2004.04.019
- Venter, J. C., K. Remington, J. F. Heidelberg, A. L. Halpern, D. Rusch, J. A. Eisen, et al. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74 https://doi.org/10.1126/science.1093857
- Visser, H., J. A. M. de Bont, and J. C. Verdoes. 1999. Isolation and characterization of the epoxide hydrolase-encoding gene from Xanthophyllomyces dendrorhous. Appl. Environ. Microbiol. 65: 5459-5463
- Visser, H., S. Vreugdenhil, J. A. M. de Bont, and J. C. Verdoes. 2000. Cloning and characterization of an epoxide hydrolaseencoding gene from Rhodotorula glutinis. Appl. Microbiol. Biotechnol. 53: 415-419 https://doi.org/10.1007/s002530051635
- Weijers, C. A. G. M. and J. A. M. de Bont. 1999. Epoxide hydrolases from yeasts and other sources: Versatile tools in biocatalysis. J. Mol. Catal. B Enzym. 6: 199-214 https://doi.org/10.1016/S1381-1177(98)00123-4
- Woo, J.-H., O.-K. Hwang, S. G. Kang, H. S. Lee, J. Cho, and S.-J. Kim. 2007. Cloning and characterization of three novel epoxide hydrolases from a marine bacterium, Erythrobacter litoralis HTCC2594. Appl. Microbiol. Biotechnol. 76: 365-375 https://doi.org/10.1007/s00253-007-1011-z
- Yamada, T., C. Morisseau, J. E. Maxwell, M. A. Argiriadi, D. W. Christianson, and B. D. Hammock. 2000. Biochemical evidence for the involvement of tyrosine in epoxide activation during the catalytic cycle of epoxide hydrolase. J. Biol. Chem. 275: 23082-23088 https://doi.org/10.1074/jbc.M001464200
- Zou, J., B. M. Hallberg, T. Bergfors, F. Oesch, M. Arand, S. L. Mowbray, and T. A. Jones. 2000. Structure of Aspergillus niger epoxide hydrolase at 1.8 A resolution: Implications for the structure and function of the mammalian microsomal class of epoxide hydrolases. Structure 15: 111-122