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Genetic and Phylogenetic Relationships of Genus Hemerocallis in Korea Using ISSR

ISSR에 의한 한국 내 원추리속 식물의 유전적 및 계통학적 연구

  • Choi, Joo-Soo (Department of Molecular Biology, Dong-eui University) ;
  • Huh, Hong-Wook (Department of Biology Education, Pusan National University) ;
  • Lee, Seol-A (Department of Biology Education, Pusan National University) ;
  • Huh, Man-Kyu (Department of Molecular Biology, Dong-eui University)
  • 최주수 (동의대학교 분자생물학과) ;
  • 허홍욱 (부산대학교 생물교육학과) ;
  • 이설아 (부산대학교 생물교육학과) ;
  • 허만규 (동의대학교 분자생물학과)
  • Published : 2008.06.30

Abstract

Genus Hemerocallis is a herbaceous species and some species among their taxa are very important herbal medicines. We evaluated representative samples of the eight taxa in Korea with inter simple sequence repeats (ISSR) markers to estimate phylogenetic relationships within taxa of this genus. The studied taxa were Hemerocallis fulva L., H. fulva for. kwanso, H. dumortieri Morren, H. coreana Nakai, H. hongdoensis M.G.Chung & S.S.Kang, H. middendorffi Trautv. et Mayer, H. thunbergii Baker, H. minor Miller. In addition, we investigated the genetic variation and structure of Korean populations of these taxa. The mean genetic diversity was 0.098 across species, varying from 0.068 to 0.123. A low level of genetic variation was found in populations of Hemerocallis species. Specially, gene diversity for H. minor was maintained the highest among genus Hemerocallis. An indirect estimate of the number of migrants per generation (Nm=0.218) indicated that gene flow was not extensive among Korean populations of Hemerocallis species. The phylogenic tree showed distinct three clades. One includes H. fulva, H. fulva for. kwanso and H. middendorffi. Another includes three Hemerocallis species, H. dumortieri, H. thunbergii and H. minor. The H. coreana and H. hongdoensis were shown as the sister group to the second clades. Although the size of sampling was not large enough for eight Korean Hemerocallis species, the analyses of ISSRs will certainly provide an enhanced view on the phylogeny of species.

원추리속(Genus Hemerocallis) 식물은 초본이며 일부 종은 약용으로 매우 중요하다. 이 속내 8개 분류군에 대해 ISSR (inter simple sequence repeats) 마커로 계통학적 관계를 분석하였다. 조사한 식물은 원추리(Hemerocallis fulva), 왕원추리(H. fulva for. kwanso), 각시원추리(H. dumortieri), 골잎원추리(H. coreana), 홍도원추리(H. hongdoensis), 큰원추리(H. middendorffi), 노랑원추리(H. thunbergii), 애기원추리(H. minor)이다. 또한 이들 분류군에 대한 유전적 변이와 구조를 조사하였다. 종간 유전적 다양도는 $0.068{\sim}0.123$이며 평균 유전적 다양도는 0.098로 전반적으로 낮았다. 애기원추리가 가장 높은 값을 나타내었다. 세대 당 이주하는 개체수는 매우 적었다(Nm=0.128). 원추리속 종은 계통도에서 세 분지군으로 나누어졌다. 한 그룹은 H. fulva, H. fulva for. kwanso, H. middendorffi였다. 다른 그룹은 Hemerocallis, H. dumortieri, H. thunbergii, H. minor였다. 나머지는 H. coreana와 H. hongdoensis로 두 번째 그룹과 자매군을 형성하였다. 비록 종 내 적은 개체수로 분석하였지만 원추리속 식물종이 ISSR 마커로 잘 분리되었다.

Keywords

References

  1. Bornet, B. and M. Branchard. 2001. Nonanchored Inter simple sequence repeat (ISSR) markers: reproducible and specific tools for genome fingerprinting. Plant Mol. BioI. Rep. 19, 209-215 https://doi.org/10.1007/BF02772892
  2. Chung, M. G and S. S. Kang. 1994a. Hemerocallis hongdoensis (Liliaceae), a new species from Korea. Novon 4, 94-97 https://doi.org/10.2307/3391573
  3. Chung, M. G and S. S. Kang. 1994b. Morphometric analysis of the genus Hemerocallis 1. (Lilisceae) in Korea. J. Plant Res. 107, 165-175 https://doi.org/10.1007/BF02346013
  4. Chung, M. G, H. G Chung and S. S. Kang. 1994. Distribution and morphometric analysis of Hemerocallis hakuunensis and H. thunbergii. Kor. J. Plant Tax. 24, 17-32 https://doi.org/10.11110/kjpt.1994.24.1.017
  5. Esselman, E., J. L. Jiangquiang, D. J. Crawford, J. L. Winduss and A. D. Wolfe. 1999. Clonal diversity in the rare Calamagrosis porteri ssp. insperata (Poaceae): comparative results for allozymes and random amplified polymorphic DNA (RAPD) and their simple sequence repeat (ISSR) markers. Mol. Ecol. 8, 443-451 https://doi.org/10.1046/j.1365-294X.1999.00585.x
  6. Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) Version 3.5s. Distributed by the Author. Department of Genetics, Univ. of Washington, Seattle
  7. Godwin, I. D., E. A. B. Aiken and L. W. Smith. 1997. Application of inter simple sequence repeat (ISSR) markers to plant genetics. Electrophoresis 18, 1524-1528 https://doi.org/10.1002/elps.1150180906
  8. Hamrick, J. L. and M. J. W. Godt. 1989. Allozyme Diversity in Plant Species, pp. 304-319, In Brown, A. H. D., M. T. Clegg, A. L. Kahler and B. S. Weir (eds.), Plant Population Genetics, Breeding and Genetic Resources, Sinauer Associates, Sunderland, MA
  9. Han, H. M. 1996. Detection of genetic variability in daylily genus (Hemerocallis) using randomly amplified polymorphic DNAs. Donguk University, MS
  10. Iruela, M., J. Rubio, J. I. Cubero, J. Gil and T. Mill. 2002. Phylogenetic analysis in the genus Cicer and cultivated chickpea using RAPD and ISSR markers. Theor. Appl. Genet. 104, 643-651 https://doi.org/10.1007/s001220100751
  11. Kang, S. S. and Chung, M. G 1994. Hemerocallis hakuunensis (Liliaceae) in Korea. Sida 16, 23-31
  12. Kang, S. S., J. Noguchi, K. B. Park and M. G Chung. 1998. Allozyme diversity in Japanese populations of Hemerocallis thunbergii, H. middendorffii, and H. exaltata (Liliaceae). Nordic J. Bot. 18, 581 - 587 https://doi.org/10.1111/j.1756-1051.1998.tb01540.x
  13. Kwon, K. S. 1980. Morphological and cytological studies on the genus Hemerocallis in Korea. Ewha Womans University, MS., Seoul
  14. Le Thierry d'Enneequin, M., B. Poupance and A. Starr. 2000. Assessment of genetic relationships between Setaria italica and its wild relative S. viridis using AFLP markers. Theor. Appl. Genet. 100, 1061-1066 https://doi.org/10.1007/s001220051387
  15. Liu, B. and J. F. Wendel. 2001. Intersimple sequence repeat (ISSR) polymorphisms as a genetic marker system in cotton. Mol. Ecol. Notes 1, 205- 208 https://doi.org/10.1046/j.1471-8278.2001.00073.x
  16. Matsuoka, M. and M. Hotta. 1966. Classification of Hemerocallis in Japan and its vicinity. Acta Phytotax. Geobot. 22, 25-43
  17. Nakai, T. 1932. Hemerocallis japonica. Bot. Mag. Tokyo 46, 111-126 https://doi.org/10.15281/jplantres1887.46.111
  18. Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 701, 3321-3323
  19. Noguchi, J. 1986. Geographical and ecological differentiation in the Hemerocallis dumortieri complex with special reference to its karylolgy. J. Sci. Hiroshima Univ. Hirosima, Japans. Ser. B., Div. 2, Bot. 20, 29-193
  20. Qian, W., S. Ge and D. Y. Hong. 2001. Genetic variation within and among populations of a wild rice Oryza granulata from China detected by RAPD and ISSR markers. Theor. Appl. Genet. 102, 440-449 https://doi.org/10.1007/s001220051665
  21. Saitou, N. and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. BioI. Evol. 4, 406-425
  22. Yasumoto, A. A. and T. Yahara. 2006. Post-pollination reproductive isolation between diurnally and nocturnally flowering daylilies, Hemerocallis fulva and Hemerocallis citrina. J. Plant Res. 119, 617-623 https://doi.org/10.1007/s10265-006-0028-1
  23. Yeh, F. c. R. C. Yang and T. Boyle. 1999. POPGENE Version 1.31, Microsoft Windows-based Freeware for Population Genetic Analysis. University of Alberta, Alberta