참고문헌
- Tatusov, R. L., Koonin, E. V., Lipman, D. J.: A genomic perspective on protein families. Science, 278(5338) (1997) 631-637 https://doi.org/10.1126/science.278.5338.631
- Tatusov, R. L., Galperin, M. Y., Natale, D. A., Koonin, E. V., et al.: The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Research, 28 (2000) 33-36 https://doi.org/10.1093/nar/28.1.33
- Tatusov, R. L., Fedorova, N. D., Jackson, J. D., Aviva R Jacobs, A. R. et al.: The COG database: an updated version includes eukaryotes. BMC Bioinformatics, 4, (2003) 41 https://doi.org/10.1186/1471-2105-4-41
- Remm, M., Storm, C. E., Sonnhammer, E. L.: Automatic Clustering of Orthologs and in-paralogs from Pairwise Species Comparisons. J. Mol. Biol., 314 (2001) 1041-1052 https://doi.org/10.1006/jmbi.2000.5197
- Li, L. et al. OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes. Genome Res. 13(2003), 2178-89 https://doi.org/10.1101/gr.1224503
- Kim, S., Jung, K. S., Ryu, K. H.: Automatic Orthologous-Protein-Clustering from Multiple Complete-Genomes by the Best Reciprocal BLAST Hits. In Proc. of PAKDD 2006 Workshop, BioDM 2006, 3916(2006) 60-70
- Fitch, W. M.: Distinguishing homologous from analogous proteins. Syst. Zool., 19 (1970) 99-113 https://doi.org/10.2307/2412448
- Altschul, S. F., Gish, W., Miller, W., Myers, E. W. et al.: Basic local alignment search tool. J. Mol. Biol., 215 (1990) 403-410 https://doi.org/10.1016/S0022-2836(05)80360-2
- Chervitz, S. A., Aravind, L., Sherlock, G., Ball C. A. et al.: Comparison of the complete protein set of worm and yeast:orthology and divergence. Science, 282 (1998) 2022-2028 https://doi.org/10.1126/science.282.5396.2022
- Rubin, G. M., Yandell, M. D., Wortman, J. R., Gabor Miklos, G. L. et al.: Comparative genomics of the eukaryotes. Science, 287 (2000) 2204-2215 https://doi.org/10.1126/science.287.5461.2204
- Wheelan, S. J., Boguski, M. S., Duret, L., Makalowski, W.: Human and nematode orthologs - lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans. Gene, 238 (1999) 163-170 https://doi.org/10.1016/S0378-1119(99)00298-X
- Mushegian, A. R., Garey, J. R., Martin, J., Liu, L. X.: Large-scale taxonomic profiling of eukaryotic model organisms: a comparison of orthologous proteins enclosed by the human, fly, nematode, and yeast genomes. Genome Res., 8 (1998) 590-598 https://doi.org/10.1101/gr.8.6.590
- Kanehisa M., Peer B.: Bioinformatics in the post-sequences era. nature genetics supplement, 33 (2003) 305-310 https://doi.org/10.1038/ng1109
- Bork P., Koonin E. V.: Predicting functions from protein sequence-where are the bottlenecks?. Nat. Genet., 18 (1998) 313-318 https://doi.org/10.1038/ng0498-313
- Eisen J. A.: Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis. Genome Res., 8 (1998) 163-167 https://doi.org/10.1101/gr.8.3.163
- Galperin M. Y., Koonin E. V.: Source of systematic error in functional annotation of genomes: domain rearrangement, nonorthologous gene displacement and operon disruption. In Silico Biol., 1 (1998) 55-67
- Kimmen S.: Phylogenomic inference of protein molecular function: advances and challenges. Bioinformatics, 20 (2004) 170-179 https://doi.org/10.1093/bioinformatics/bth021
- Bono, H., Goto, S., Fujibuchi, W., Ogata, H. et al.: Systematic Prediction of Orthologous Units of Genes in the Complete Genomes. Genome Inform Ser Workshop Genome Inform., 9 (1998) 32-40
- Dongen V. (2000), http://micans.org/mcl/