References
- Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipmann. 1990. Basic local alignment tool. J. Mol. Biol. 215: 403-410 https://doi.org/10.1016/S0022-2836(05)80360-2
- Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59: 143- 169
- APHA. 1998. Standard Methods for the Examination of Water and Wastewater, 20th Ed. American Public Health Association, Washington, DC, U.S.A
- Bakken, L. R. and R. A. Olsen. 1987. The relationship between cell size and viability of soil bacteria. Microb. Ecol. 13: 103-114 https://doi.org/10.1007/BF02011247
- Bitton, G. 1994. Wastewater Microbiology. Wiley-Liss, New York, U.S.A
- Butterfield, C. T. 1935. Studies of sewage purification. II. A Zoogloea-forming bacterium isolated from activated sludge. U.S. Pub. Health Rep. 50: 671-684 https://doi.org/10.2307/4581541
- Chen, J. J., D. McCarty, D. Slack, and H. Rundle. 2000. Fullscale studies of a simplified aerated filter (BAF) for organics and nitrogen removal. Wat. Sci. Tech. 41: 1-4
- Cho, M. J., Y. K. Kim, and J. O. Ka. 2004. Molecular differentiation of Bacillus spp. antagonistic against phytopathogenic fungi causing damping-off disease. J. Microbiol. Biotechnol. 14: 599-606
- Curtis, T. P. and N. G. Craine. 1998. The comparison of the diversity of activated sludge plants. Water Sci. Technol. 37: 71-78
- Eichner, C. A., R. W. Erb, K. N. Timmis, and I. Wagner-Dobler. 1999. Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community. Appl. Environ. Microbiol. 65: 102-109
- Elefsiniotisa, P. and D. Lib. 2006. The effect of temperature and carbon source on denitrification using volatile fatty acids. Biochem. Engin. J. 28: 148-155 https://doi.org/10.1016/j.bej.2005.10.004
- Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 166-170
- Ferris, M. J., G. Muyzer, and D. M. Ward. 1996. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 62: 340-346
- Gujer, W. and D. Jenkins. 1975. A nitrification model for the contact stabilization activated sludge process. Wat. Res. 9: 561-566 https://doi.org/10.1016/0043-1354(75)90082-2
- Hengstmann, U., K.-J. Chin, P. H. Janssen, and W. Liesack. 1999. Comparative phylogenetic assignment of environmental sequences of genes encoding 16S rRNA and numerically abundant culturable bacteria from an anoxic rice paddy soil. Appl. Environ. Microbiol. 65: 5050-5058
- Hugenholtz, P., C. Pitulle, K. L. Hershberger, and N. R. Pace. 1998. Novel division level bacterial diversity in a Yellowstone hot spring. J. Bacteriol. 180: 366-376
- Kim, M. S., J. H. Ahn, M. K. Jung, J. H. Yu, D. H. Joo, M. C. Kim, H. C. Shin, T. S. Kim, T. H. Ryu, S. J. Kweon, T. S. Kim, D. H. Kim, and J. O. Ka. 2005. Molecular and cultivation-based characterization of bacterial community structure in rice field soil. J. Microbiol. Biotechnol. 15: 1087-1093
- Kim, T. S., M. S. Kim, M. K. Jung, J. H. Ahn, M. J. Joe, K. H. Oh, M. H. Lee, M. K. Kim, and J. O. Ka. 2005. Analysis of plasmid pJP4 horizontal transfer and its impact on bacterial community structure in natural soil. J. Microbiol. Biotechnol. 15: 376-383
- Knowles, R. 1982. Denitrification. Microbiol. Rev. 46: 43-70
- Kowalchuk, G. A., J. R. Stephen, W. De Boer, J. I. Prosser, T. M. Embley, and J. W. Woldendorp. 1997. Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl. Environ. Microbiol. 63: 1489-1497
- Lane, D. J. 1991. 16S/23S rRNA sequencing, pp. 115-148. In E. Stackebrandt and M. Goodfellow (eds.). Nucleic Acid Techniques in Bacterial Systematics. John Wiley and Sons, Chichester, England
- Lu, F., J. Lukasik, and S. R. Farrah. 2001. Immunological methods for the study of Zoogloea strains in natural environments. Wat. Res. 17: 4011-4018
- Lyautey, E., B. Lacoste, L. Ten-Hage, J.-L. Rols, and F. Garabetian. 2005. Analysis of bacterial diversity in river biofilms using 16S rDNA PCR-DGGE: Methodological settings and fingerprints interpretation. Wat. Res. 39: 380- 388 https://doi.org/10.1016/j.watres.2004.09.025
- Ministry of Environment (Korea). 2006. Water Environment Preservation Act (The Act, the Enforcement Ordinance, and the Enforcement Regulations), pp. 13
- Muyzer, G., E. C. De Waal, and A. G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59: 695-700
- Muyzer, G. and K. Smalla. 1998. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek 73: 127-141 https://doi.org/10.1023/A:1000669317571
- Nicolaisen, M. H. and N. B. Ramsing. 2002. Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria. J. Microbiol. Methods 50: 189-203 https://doi.org/10.1016/S0167-7012(02)00026-X
- Norris, T. B., J. M. Wraith, R. W. Castenholz, and T. R. McDermott. 2002. Soil microbial community structure across a thermal gradient following a geothermal heating event. Appl. Environ. Microbiol. 68: 6300-6309 https://doi.org/10.1128/AEM.68.12.6300-6309.2002
- Ohashi, A., D. G. Viraj de Silva, V. Mobarry, J. A. Manem, D. A. Stahl, and B. E. Rittmann. 1995. Influence of substrate C/N ratio on the structure of multi-species biofilms consisting of nitrifiers and heterotrophs. Wat. Sci. Tech. 2: 75-84
- Quana, Z. X., Y. S. Jina, C. R. Yinb, J. J. Lee, and S. T. Lee. 2005. Hydrolyzed molasses as an external carbon source in biological nitrogen removal. Bioresour. Technol. 96: 1690- 1695 https://doi.org/10.1016/j.biortech.2004.12.033
- Rho, S. C., N. H. An, D. H. Ahn, K. H. Lee, D. H. Lee, and D. J. Jahng. 2005. PCR-T-RFLP analyses of bacterial communities in activated sludges in the aeration tanks of domestic and industrial wastewater treatment plants. J. Microbiol. Biotechnol. 15: 287-295
- Rotthauwe, J.-H., K.-P. Witzel, and W. Liesack. 1997. The ammonia monooxygenase structural gene amoA as a functional marker: Molecular fine scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol. 63: 4704-4712
- Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular Cloning, 2nd Ed. Cold Spring Harbor Laboratory Press, U.S.A
- Swofford, D. L. 2002. PAUP: Phylogenetic analysis using parsimony, version 4.0. Computer program distributed by Sinauer Associates, Sunderland, Massachusetts, U.S.A
- Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 4876-4882
- Unz, R. F. and N. C. Dondero. 1967. The predominant bacteria in natural zoogloeal colonies I. Isolation and identification. Can. J. Microbiol. 13: 1671-1682 https://doi.org/10.1139/m67-217
- van Elsas, J. D., G. F. Duarte, A. S. Rosado, and K. Smalla. 1998. Microbiological and molecular biological methods for monitoring microbial inoculants and their effects in the soil environment. J. Microbiol. Methods 32: 133-154 https://doi.org/10.1016/S0167-7012(98)00025-6
- Weaver, R. W., J. S. Angle, and P. S. Bottomley. 1994. Methods of Soil Analysis Part-2: Microbiological and Biochemical Properites, pp. 74-75, 161-163, and 251-253. The Soil Science Society of America, Inc, U.S.A
- Yum, K. J., J. H. Lee, S. M. Kim, and W. S. Choi. 2002. Treatment kinetics of wastewater and morphological characteristics of biofilm in up-flow Biobead process. J. Kor. Soc. Wat. Qual. 10: 201-212
- Zumft, W. G. 1997. Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Rev. 61: 533-616