References
- Altman, N. (2005) Replication, variation and normalization in microarray experiments. Applied Bioinformatics 4, 33-44 https://doi.org/10.2165/00822942-200504010-00004
- Coego, A., Ramirez, V., Gil, M. J., Flors, V., Mauch-Mani, B., et al. (2005) An Arabidopsis homeodomain transcription factor, overexpressor of cationic peroxidase 3, mediates resistance to infection by necrotrophic pathogens. Plant Cell 17, 2123- 2137 https://doi.org/10.1105/tpc.105.032375
- Collins, N. C., Thordal-Christensen, H., Lipka, V., Bau, S., Kombrink, E., et al. (2003) SNARE-protein-mediated disease resistance at the plant cell wall. Nature 425, 973-977 https://doi.org/10.1038/nature02076
- Fukao, T. and Bailey-Serres, J. (2004) Plant responses to hypoxia-- is survival a balancing act? Trends in Plant Sci. 9, 449-456 https://doi.org/10.1016/j.tplants.2004.07.005
- Gutterson, N. and Reuber, T. (2004) Regulation of disease resistance pathways by AP2/ERF transcription factors. Curr. Opin. Plant Biol. 7, 465-471 https://doi.org/10.1016/j.pbi.2004.04.007
- Hammond-Kosack, K. E. and Jones, J. D. G. (1996) Resistance gene-dependent plant defense responses. Plant Cell 8, 1773- 1791 https://doi.org/10.1105/tpc.8.10.1773
- Jakoby, M., Weisshaar, B., Droge-Laser, W., Vicente-Carbajosa, J., Tiedemann, J., et al. (2002) bZIP transcription factors in Arabidopsis. Trends Plant Sci. 7, 106-111 https://doi.org/10.1016/S1360-1385(01)02223-3
- Kameswara Rao, K., Lakshminarasu, M., and Jena, K. K. (2002) DNA markers and marker-assisted breeding for durable resistance to bacterial blight disease in rice. Biotechnol. Adv. 20, 33-47 https://doi.org/10.1016/S0734-9750(02)00002-2
- Kameswara Rao, K., Jena, K. K., and Lakshminarasu, M. (2003) Molecular tagging of a new bacterial blight resistance gene in rice using RAPD and SSR markers. International Rice Research Notes 20, 16-17
- Kauffman, H. E., Reddy, A. P. K., Hsieh, S. P. Y., and Merca, S. D. (1973) An improved technique for evaluation of rice varieties to Xanthomonas oryzae. Plant Disease Report 57, 537-541
- Kikuchi, S., Satoh, K., Nagata, T., Kawagashira, N., Doi, K., et al. (2003) Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science 301, 376- 379 https://doi.org/10.1126/science.1081288
- Kottapalli, K. R. (2004) Molecular mapping and pyramiding bacterial blight resistance genes into the rice cultivar 'Samba Mashuri' using DNA markers. Ph.D. Thesis, Jawaharlal Nehru Technology University, Hyderabad, India
- Kottapalli, K. R., Sarla, N., and Kikuchi, S. (2006) In silico insight into two rice chromosomal regions associated with submergence tolerance and resistance to bacterial leaf blight and gall midge. Biotechnol. Adv. 24, 561-589 https://doi.org/10.1016/j.biotechadv.2006.05.003
- Kroymann, J. and Mitchell-Olds, T. (2005) Epistasis and balanced polymorphism influencing complex trait variation. Nature 435, 95-98 https://doi.org/10.1038/nature03480
- Lee, S. W., Han, S. W., Bartley, L. E., and Ronald, P. C. (2006) Unique characteristics Xanthomonas oryzae pv. oryzae AvrXa21 and implications for plant innate immunity. Proc. Natl. Acad. Sci. USA 103, 18395-18400
- Martin-Magniette, M. L., Aubert, J., Cabannes, E., and Daudin, J. J. (2005) Evaluation of the gene-specific dye bias in cDNA microarray experiments. Bioinformatics 21, 1995-2000 https://doi.org/10.1093/bioinformatics/bti302
- Ponting, C. P. (1997) Evidence for PDZ domains in bacteria, yeast, and plants. Protein Sci. 6, 464-468 https://doi.org/10.1002/pro.5560060225
- Ponting, C. P., Phillips, C., Davies, K. E., and Blake, D. J. (1997) PDZ domains: targeting signalling molecules to sub-membranous sites. Bioassays 19, 469-479 https://doi.org/10.1002/bies.950190606
- Rosenzweig, B. A., Pine, P. S., Domon, O. E., Morris, M., Chen, J. J., et al. (2004) Dye bias correction in dual-labeled cDNA microarray gene expression measurements. Environ. Health Perspect. 112, 480-487 https://doi.org/10.1289/ehp.6694
- Shanti, M. L., George, M. L. C., Vera Cruz, C. M., Bernardo, M. A., Nelson, R. J., et al. (2001) Identification of resistance genes effective against rice bacterial blight pathogen in Eastern India. Plant Disease 85, 506-512 https://doi.org/10.1094/PDIS.2001.85.5.506
- Shimizu, T., Satoh, K., Kikuchi, S., and Omura, T. (2006) The repression of cell wall- and plastid-related genes and the induction of defense-related genes in rice plants infected with Rice dwarf virus. Mol. Plant-Microbe Interact. 20, 247-254 https://doi.org/10.1094/MPMI-20-3-0247
- Sinagliw, M., Toojinda, T., Trangoonrung, S., and Vanavichit, A. (2003) Thai jasmine rice carrying QTLch9 (Sub QTL) is submergence tolerant. Ann. Bot. 91, 255-261 https://doi.org/10.1093/aob/mcf123
- Toojinda, T., Siangliw, M., Tragoonrung, S., and Vanavichit, A. (2003) Molecular genetics of submergence tolerance in rice: QTL analysis of key traits. Ann. Bot. 91, 243-253 https://doi.org/10.1093/aob/mcf072
- Tron, A. E., Bertoncini, C. W., Chan, R. L., and Gonzalez, D. H. (2002) Redox regulation of plant homeodomain transcription factors. J. Biol. Chem. 277, 34800-34807 https://doi.org/10.1074/jbc.M203297200
- Van Zhong, G. and Burns, J. (2003) Profiling ethylene-regulated gene expression in Arabidopsis thaliana by microarray analysis. Plant Mol. Biol. 53, 117-131 https://doi.org/10.1023/B:PLAN.0000009270.81977.ef
- Wang, K., Li, H., and Ecker, J. (2002) Ethylene biosynthesis and signaling networks. Plant Cell 14, 153-164 https://doi.org/10.1105/tpc.000679
- Xu, K., Xu, X., Fukao, T., Canlas, P., Maghirang-Rodriguez, R., et al. (2006) Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 442, 705- 708 https://doi.org/10.1038/nature04920
- Xu, K. N. and Mackill, D. J. (1996) A major locus for submergence tolerance mapped on rice chromosome 9. Mol. Breeding 2, 219-224 https://doi.org/10.1007/BF00564199
- Yazaki, J., Shimatani, Z., Hashimoto, A., Nagata, Y., Fujii, F., et al. (2004) Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis. Physiol. Genomics 17, 87-100 https://doi.org/10.1152/physiolgenomics.00201.2003
- Yoshitala, J., Krishnaveni, D., Reddy, A. P. K., and Sonti, R. V. (1997) Genetic diversity within the population of Xanthomonas oryzae pv oryzae in India. Phytopathology 87, 760-765 https://doi.org/10.1094/PHYTO.1997.87.7.760
- Zhu, J., Shi, H., Lee, B. H., Damsz, B., Cheng, S., et al. (2004) An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway. Proc. Natl. Acad. Sci. USA 101, 9873-9878