Genomic Fingerprinting of Antituberculosis Agents-Resistant Lactobacillus ruminus SPM0211 Using the Microbial $Uniprimer^{TM}$ Kit

  • Published : 2005.07.01

Abstract

A Lactobacillus isolate was collected from the feces of a healthy Korean individual and named as Lactobacillus ruminus SPM0211. It was further characterized by subjecting it to an antibiotic resistance test and genetic analysis. In the antibiotic resistance test, all tested Lactobacillus spp. were classified as 'high resistance' for multiple antibiotics, such as isoniazid, ethambutol, cycloserine, and vancomycin. L. ruminus SPM0211 was classified as 'high resistance' for streptomycin also, while the other tested Lactobacillus spp. were classified as low resistance. This suggests that the antimicrobial spectra may be a good indicator in the discrimination of this strain among the tested Lactobacillus spp. In a polymerase chain reaction-random amplified polymorphic DNA (PCR-RAPD) analysis using the Microbial Uniprimer kit, L. ruminus SPM0211, and L. suebicus were clustered as a group with a 74.3% similarity level, suggesting that these two species are genetically related. Thus, our data suggest that the PCR-RADP method using the Microbial Uniprimer kit may be valuable in discriminating L. ruminus SPM0211 from other Lactobacillus spp.

Keywords

References

  1. Drake, M., Spence, C. L., and Swanson, B. G., Rapid detection and identification of Lactobacillus spp. In dairy products by using polymerase chain reaction. J. Food. Prot., 59, 1031-1036 (1996) https://doi.org/10.4315/0362-028X-59.10.1031
  2. Kang, H. W., Go, S. J., and Eun, M. Y., Fingerprinting of diverse genomes using PCR with universal rice primers generated from repetitive sequence of Korean weedy rice. Mol. Cells, 13, 1-7 (2002)
  3. Klein, G., Park, A., Bonaparte, C., and Reuter, G., Taxonomy and physiology of probiotic lactic acid bacteria. Int. J. Food Microbiol., 41, 105-125 (1998)
  4. MacGowan, A. P., O'Donaghue, K., Nicholas, S., McLauchlin, J., Bennett, P. M., and Reeves, D. S., Typing of Listeria spp. by random amplified polymorphic DNA (RAPD) analysis. J. Clin. Microbiol., 38, 322-327 (1993)
  5. Mazurier, S., van de Giessen, A., Heuvelman, K., and Wernars, K., RAPD analysis of Campylobacter isolates: DNA fingerprinting without the need to purify DNA. Lett. Appl. Microbiol., 14, 260-262 (1992) https://doi.org/10.1111/j.1472-765X.1992.tb00700.x
  6. McMillin, D. E. and Muldrow, L. L. Typing of toxic strains of Clostridium difficile using DNA fingerprinting generated with arbitrary polymerase chain reaction primers. FEMS Microbiol. Lett., 71, 5-9 (1992) https://doi.org/10.1111/j.1574-6968.1990.tb03789.x
  7. National Committee for Clinical Laboratory Standards. In Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically, 3rd ed. Approved Standard M7-A3. National Committee for Clinical Laboratory Standards, Villaniva, Pa., (1993)
  8. Nei, M. Genetic distance between population. The American Nationalist., 106, 283-292 (1972) https://doi.org/10.1086/282771
  9. Roy, D., Ward, P., Vincent, D., and Mondou, F., Molecular identification of potentially probiotic Lactobacilli. Curr. Microbiol., 40, 40-46 (2000) https://doi.org/10.1007/s002849910008
  10. Sandery, M., Coble, J., and McKersie-Donnolley, S. Random amplified polymorphic DNA (RAPD) profiling of Legionella pneumophila. Lett. Appl. Microbiol., 19, 184-187 (1994) https://doi.org/10.1111/j.1472-765X.1994.tb00939.x
  11. Welsh, J. and McClelland. M., Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res., 18, 213-7218 (1990)
  12. Wu, D. Y., Ugozzoli, Y. L., Pal, B. K., and Qian, J., The effect of temperature and oligonucleotide primer length on the specificity and efficiency of amplification by polymerase chain reaction. DNA Cell. Biol., 10, 233-238 (1991) https://doi.org/10.1089/dna.1991.10.233