참고문헌
- Batzer, M. A., P. L. Deininger, U. Hellmann-Blumberg, J. Jurka, D. Labuda, C. M. Rubin, C. W. Schmid, E. Zietkiewicz and E. Zuckerkandl. 1996. Standardized nomenclature for Alu repeats. J. Mol. Evol. 42, 3-6 https://doi.org/10.1007/BF00163204
- Batzer, M. A. and P. L. Deininger. 2002. Alu repeats and human genomic diversity. Nat. Rev. Genet. 3, 370-379 https://doi.org/10.1038/nrg798
- Bernardi, G. 2001. Misunderstandings about isochores. Gene 276, 3-13 https://doi.org/10.1016/S0378-1119(01)00644-8
- Boeke, J. D. 1997. LINEs and Alus the polyA connection. Nature Genet. 16, 6-7 https://doi.org/10.1038/ng0597-6
- Britten, R. J. 1994. Evidence that most human Alu sequences were inserted in a process that ceased about 30 million years ago. Proc. Natl. Acad. Sci. USA 91, 6148-6150 https://doi.org/10.1073/pnas.91.13.6148
- Brookfield, J. F. 2001. Selection on Alu sequences? Curr. Biol. 11, 900-901
- Chae, J. J., Y. B. Park, S. H. Kim, S. S. Hong, G. J. Song, K. H. Han, Y. Namkoong, H. S. Kim and C. C. Lee, 1997. Two partial deletion mutations involving the same Alu sequence within intron 8 of the LDL receptor gene in Korean patients with familial hypercholesterolemia. Hum. Genet. 99, 155-163 https://doi.org/10.1007/s004390050331
- Chen, C. A., J. Gentles, J. Jurka and S. Karlin. 2002. Genes, pseudogenes, and Alu sequence organization across human chromosomes 21 and 22. Proc. Natl. Acad. Sci. USA 99, 2930-2935 https://doi.org/10.1073/pnas.052692099
- Dagan., T, R. Sorek, E. Sharon, G. Ast and D. Graur. 2004. AluGene: a database of Alu elements incorporated within protein-coding genes. Nucleic Acids Res. 32, D489-492
- Deininger, P. L. and V. K. Slagel, 1988. Recently amplified Alu family members share a common parental Alu sequence. Mol. Cell. Biol. 8, 4566-4569
- Deininger, P. L., M. A. Batzer , C. A. Hutchison and M. H. Edgell. 1992. Master genes in mammalian repetitive DNA amplification. Trends Genet. 8, 307-311 https://doi.org/10.1016/0168-9525(92)90262-3
- Deininger, P. L. and M. A. Batzer. 1999. Alu repeats and human disease. Mol. Genet. Metab. 67, 183-193 https://doi.org/10.1006/mgme.1999.2864
- Feng, Q., J. V. Moran, H. H. Kazazian. Jr and J. D. Boeke. 1996. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87, 905-916 https://doi.org/10.1016/S0092-8674(00)81997-2
- Flint, J., J. Rochette, C. F. Craddoc, C. Dode, B. Vignes, S. W. Horsley, L. Kearney, V. J. Buckle, H. Ayyub and D. R. Higgs. 1996. Chromosomal stabilisation by a subtelomeric rearrangement involving two closely related Alu elements. Hum. Mol. Genet. 5, 1163-1169 https://doi.org/10.1093/hmg/5.8.1163
- Ganguly, A., T. Dunbar, P. Chen, L. Godmilow and T. Ganguly. 2003. Exon skipping caused by an intronic insertion of a young Alu Yb9 element leads to severe hemophilia A. Hum. Genet. 113, 348-352 https://doi.org/10.1007/s00439-003-0986-5
- Grover, D., M. Mukerji, P. Bhatnagar, K. Kannan and S. K. Brahmachari. 2004. Alu repeat analysis in the complete human genome: trends and variations with respect to genomic composition. Bioinformatics 20, 813-817 https://doi.org/10.1093/bioinformatics/bth005
- Hilgard, P., T. Huang, A. W. Wolkoff and R. J. Stockert. 2002. Translated Alu sequence determines nuclear localization of a novel catalytic subunit of casein kinase 2. Am. J. Physiol. Cell Physiol. 283, C472-C483 https://doi.org/10.1152/ajpcell.00070.2002
- Houck, C. M., F. P. Rinehart and C. W. Schmid. 1979. A ubiquitous family of repeated DNA sequences in the human genome. J. Mol. Biol. 132, 289-306 https://doi.org/10.1016/0022-2836(79)90261-4
- Hutchinson, G. B., S. E. Andrew, H. McDonald, Y. P. Goldberg, R. Graham, J. M. Rommens and M. R. Hayden. 1993. An Alu element retroposition in two families with Huntington disease defines a new active Alu subfamily. Nucleic Acids Res. 21, 3379-3383 https://doi.org/10.1093/nar/21.15.3379
- International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. 2001. An assembly and annotation of the first draft sequence of the entire human genome that includes a comprehensive analysis of repeated DNA sequences. Nature 409, 860-921 https://doi.org/10.1038/35057062
- Jurka, J. and T. Smith. 1988. A fundamental division in the Alu family of repeated sequences. Proc. Natl. Acad. Sci. U S A. 85, 4775-4778 https://doi.org/10.1073/pnas.85.13.4775
- Jurka, J. 1993. A new subfamily of recently retroposed Alu repeats. Nucleic Acids Res. 21, 2252 https://doi.org/10.1093/nar/21.9.2252
- Jurka, J. and P. Klonowski. 1996. Integration of retroposable elements in mammals: selection of target sites. J. Mol. Evol. 43, 685-689 https://doi.org/10.1007/BF02202117
- Jurka, J. 2000. Repbase update: A database and an electronic journal of repetitive elements, Trends Genet. 16, 418-420 https://doi.org/10.1016/S0168-9525(00)02093-X
- Jurka, J., M. Krnjajic, V. V. Kapitonov, J. E. Stenger and O. Kokhanyy. 2002. Active Alu elements are passed primarily through paternal germlines. Theor. Popul. Biol. 61, 519-530 https://doi.org/10.1006/tpbi.2002.1602
- Jurka, J., O. Kohany, A. Pavlicek, V. V. Kapitonov and M. V. Jurka. 2004. Duplication, coclustering, and selection of human Alu retrotransposons. Proc. Natl. Acad. Sci. U S A. 101, 268-272
- Kapitonov, V. and J. Jurka. 1996. The age of Alu subfamilies. J. Mol. Evol. 42, 59-65 https://doi.org/10.1007/BF00163212
- Knebelmann, B., L. Forestier, L. Drouot, S. Quinones, C. Chuet, F. Benessy, J. Saus and C. Antignac. 1995. Splice-mediated insertion of an Alu sequence in the COL4A3 mRNA causing autosomal recessive Alport syndrome. Hum. Mol. Genet. 4, 675-679 https://doi.org/10.1093/hmg/4.4.675
- Kolomietz, E., M. S. Meyn, A. Pandita and J. A. Squire. 2002. The role of Alu repeat clusters as mediators of recurrent chromosomal aberrations in tumors. Genes Chromosomes Cancer 35, 97-112 https://doi.org/10.1002/gcc.10111
- Korenberg, J. R. and M. C. Rykowski. 1988. Human genome organization: Alu, lines, and the molecular structure of metaphase chromosome bands. Cell 53, 391-400 https://doi.org/10.1016/0092-8674(88)90159-6
- Lander, E. S., L. M. Linton, B. Birren, C. Nusbaum, M. C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, W. FitzHugh et al. 2001 M. itial sequencing and analysistzHughe human genome. Nature 409, 860-921 https://doi.org/10.1038/35057062
- Le Goff, W., M. Guerin, M. J. Chapman and J. Thillet. 2003. A CYP7A promoter binding factor site and Alu repeat in the distal promoter region are implicated in regulation of human CETP gene expression. J. Lipid Res. 44, 902-910 https://doi.org/10.1194/jlr.M200423-JLR200
- Lev-Maor, G., R. Sorek, N. Shomron and G. Ast. 2003. The birth of an alternatively spliced exon: 3' splice-site selection in Alu exons. Science 300, 1288-1291 https://doi.org/10.1126/science.1082588
- Li, L. and P. F. Bray. 1993. Homologous recombination among three intragene Alu sequences causes an inversion-deletion resulting in the hereditary bleeding disorder Glanzmann thrombasthenia. Am. J. Hum. Genet. 53, 140-149
- Li, T. H. and C. W. Schmid. 2004. Alu's dimeric consensus sequence destabilizes its transcripts. Gene 324, 191-200 https://doi.org/10.1016/j.gene.2003.09.036
- Li, W. H., Z. Gu, H. Wang and A. Nekrutenko. 2001. Evolutionary analyses of the human genome. Nature 409, 847-849 https://doi.org/10.1038/35057039
- Makalowski, W., G. A. Mitchell and D. Lauda. 1994. Alu sequences in the coding regions of mRNA: A source of protein variability. Trends Genet. 10, 188-193 https://doi.org/10.1016/0168-9525(94)90254-2
- Matera, A. G., U. Hellmann and C. W. Schmid. 1990. A transpositionally and transcriptionally competent Alu subfamily. Mol. Cell. Biol. 10, 5424-5432
- Mathias, S. L., A. F. Scott, H. H. Jr. Kazazian, J. D. Boeke and A. Gabriel. 1991. Reverse transcriptase encoded by a human transposable element. Science 254, 1808-1810 https://doi.org/10.1126/science.1722352
- Mazzarella, R. and D. Schlessinger. 1997. Duplication and distribution of repetitive elements and non-unique regions in the human genome. Gene 205, 29-38 https://doi.org/10.1016/S0378-1119(97)00477-0
- Mighell, A. J., A. F. Markham and P. A. Robinson. 1997. Alu sequences. FEBS Lett. 417, 1-5 https://doi.org/10.1016/S0014-5793(97)01259-3
- Mitchell, G. A., D. Labuda, G. Fontaine, J. M. Saudubray, J. P. Bonnefont, S. Lyonnet, L. C. Brody, G. Steel, C. Obie and D. Valle. 1991. Splice-mediated insertion of an Alu sequence inactivates ornithine delta-aminotransferase: a role for Alu elements in human mutation. Proc. Natl. Acad. Sci. USA 88, 815-819. https://doi.org/10.1073/pnas.88.3.815
- Nekrutenko, A. and W. H. Li. 2001. Transposable elements are found in a large number of human protein-coding genes. Trends Genet. 17, 619-621 https://doi.org/10.1016/S0168-9525(01)02445-3
- Norris, J., D. Fan, C. Aleman, J. R. Marks, P. A. Futreal, R. W. Wiseman, J. D. Iglehart, P. L. Deininger and D. P. McDonnell. 1995. Identification of a new subclass of Alu DNA repeats which can function as estrogen receptordependent transcriptional enhancers. J. Biol. Chem. 270, 22777-22782 https://doi.org/10.1074/jbc.270.39.22777
- Pavlicek, A., K. Jabbari, J. Paces, V. Paces, J. V. Hejnar and G. Bernardi. 2001. Similar integration but different stability of Alus and LINEs in the human genome. Gene 276, 39-45 https://doi.org/10.1016/S0378-1119(01)00645-X
- Ricci, V., S. Regis, M. Di Duca and M. Filocamo. 2003. An Alu mediated rearrangement as cause of exon skipping in Hunter disease. Hum. Genet. 112, 419-425
- Roy, A. M., M. L. Carroll, S. V. Nguyen, A. H. Salem, M. Oldridge, A. O. M. Wilkie, M. A. Batzer and P. L. Deininger. 2000. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 10, 1485-1495 https://doi.org/10.1101/gr.152300
- Roy-Engel, A. M., M. L. Carrol, E. Vogel, R. K. Garber, S. V. Nguyen, A. H. Salem, M. A. Batzer and P. L. Deininger. 2001. Alu insertion polymorphisms for the study of human genomic diversit. Genetics 159, 279-290
- Roy-Engel, A. M., M. L. Carroll, M. El-Sawy, A. H. Salem, R. K. Garber, S. V. Nguyen, P. L. Deininger and M. A. Batzer. 2002. Non-traditional Alu evolution and primate genomic diversity. J. Mol. Biol. 316, 1033-1040 https://doi.org/10.1006/jmbi.2001.5380
- Roy-Engel, A. M., A. H. Salem, O. O. Oyeniran , P. L. Deininger, D. J. Hedges, G. E. Kilroy, M. A. Batzer and P. L. Deininger. 2002. Active Alu element 'A-tails': size does matter. Genome Res. 12, 1333-1344 https://doi.org/10.1101/gr.384802
- Salem, A. H., G. E. Kilroy, W. S. Watkins , L. B. Jorde and M. A. Batzer. 2003. Recently integrated Alu elements and human genomic diversity. Mol. Biol. Evol. 20, 1349-1361 https://doi.org/10.1093/molbev/msg150
- Schmid, C. W. 1996. Alu: structure, origin, evolution, significance and function of one- tenth of human DNA. Prog. Nucleic Acid Res. Mol. Biol. 53, 283-319 https://doi.org/10.1016/S0079-6603(08)60148-8
- Singer, M. F. 1982. SINEs and LINEs: highly repeated short and long interspersed sequences in mammalian genomes. Cell 28, 433-434 https://doi.org/10.1016/0092-8674(82)90194-5
- Sorek, R., G. Ast and D. Graur. 2002. Alu-containing exons are alternatively spliced. Genome Res. 12, 1060-1067 https://doi.org/10.1101/gr.229302
- Ullu, E. and C. Tschudi. 1984. Alu sequences are processed 7SL RNA genes. Nature 312, 171-172 https://doi.org/10.1038/312171a0
- Vansant, G. and W. F. Reynolds. 1995. The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element. Proc. Natl. Acad. Sci. USA 92, 8229-8233 https://doi.org/10.1073/pnas.92.18.8229
- Vervoort, R., R. Gitzelmann, W. Lissens and I. Liebaers. 1998. A mutation (IVS8+0.6kbdelTC) creating a new donor splice site activates a single nucleotide polymorphisms within Alus, as well as a cryptic exon in an Alu-element in intron 8 of the human b-glucuronidase gene. Hum. Genet. 103, 686-693
- Vidaud, D., M. Vidaud, B. R. Bahnak, V. Siguret, S. Sanchez, Y. Laurian, D. Meyer, M. Goosens and J. M. Lavergne. 1993. Haemophilia B due to a de novo insertion of a human-specific Alu subfamily member within the coding region of the factor IX gene. Eur. J. Hum. Genet. 1, 30-36