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Genetic Variation in Fusarium oxysporum f. sp. fagariae Populations Based RAPD and rDNA RFLP Analyses

  • Published : 2004.12.31

Abstract

Fusarium oxysporum f. sp. fragariae is a fungal pathogen causing strawberry wilt disease. The random amplified polymorphic DNA (RAPD) and restriction fragment length polymorphisms (RFLPs) of intergenic spacer (IGS) region of rDNA were used to identify genetic variation among 22 F. oxysporum f. sp. fragariae isolates. All isolates could be distinguished from each other by RAPD analysis and RFLP of 2.6 kb amplified with primer CNS1 and CNL12 for IGS region of rDNA. Cluster analysis using UPGMA showed eight distinct clusters based on the banding patterns obtained from RAPD and rDNA RFLP. These results indicate that F. oxysporum f. sp. fragariae isolates are genetically distinct from each other, There was a high level genetic variation among F. oxysporum f. sp. fragariae.

Keywords

References

  1. Annamalai, P., Ishii, H., Lalithakumari, D. and Revathi, R. 1995. Polymerase chain reaction and its applications in fungal disease diagnosis. J Plant Dis. Protect. 102: 91-104
  2. Appel, D. J. and Gordon, T. R. 1995. Intraspecific variation within populations of Fusarium oxyspomm based on RFLP analysis of the intergenic spacer region of the rDNA Experimental Mycol.19:120-128 https://doi.org/10.1006/emyc.1995.1014
  3. Appel, D. J. and Gordon, T. R. 1996. Local and regional variation in populations of Fusarium oxysporum based on RFLP analysis of the intergenic spacer region of the ribosomal DNA. Mol. Plant-Microbe Interact. 9: 125-138 https://doi.org/10.1094/MPMI-9-0125
  4. Cai, G, Rosewich Gale, L., Schneider, R. W, Kistler, H. C., Davis, R. M., Elias, K. S. and Miyao, E. M. 2003. Origin of Race 3 of Fusarium oxysporum f. sp. lycopersici at a single site in California. Phytopathology 93: 1014-1022 https://doi.org/10.1094/PHYTO.2003.93.8.1014
  5. Edel, v., Steinberg, C., Avelang, I., Laguerre, G and Alabouvette, C. 1995. Comparison ofthree molecular methods for the characterization of Fusarium oxysporum strains. Phytopathology 85:579-585 https://doi.org/10.1094/Phyto-85-579
  6. Grajal-Martin, M. J., Simon, C. J. and Muehlbauer, F. J. 1993. Use of random amplified polymorphic DNA (RAPD) to characterize race 2 of Fusarium oxysporum f. sp. pisi. Phytopathology 83:612-614 https://doi.org/10.1094/Phyto-83-612
  7. Hyun, J. W. and Park, W. M. 1996. Differentiation of Fusarium oxysporum f. sp.fragariae isolates by random amplified polymorphic DNA (RAPD) analysis. Korean J Plant Pathol' 12:41-46
  8. Hyun, J. W, Kim, S. O. and Park, W M. 1996. Vegetative compatibility, Isozyme polymorphism and pathogenicity of isolates of Fusarium oxysporum f. sp.jragariae. Korean J Plant Pathol' 12:33-40
  9. Jacobson, D. J. and Gordon, T. R. 1990. Variability ofmitochondrial DNA as an indicator ofrelationship between populations of Fusarium oxysporum f. sp. melonis. Mycol. Res. 94:734-744 https://doi.org/10.1016/S0953-7562(09)81372-5
  10. Kim, C. H., Seo, H. D., Cho, W. D. and Kim, S. B. 1982. Studies on varietal resistance and chemical control to the wilt of strawberry caused by Fusarium oxysporum. Korean J Plant Proteet. 21:61-67
  11. Kistler, H. C., Bosland, P. W, Benny, U., Leong, S. and Williams, P. H. 1987. Relatedness of strains of Fusarium oxysporum from crucifers measured by examination of mitochondrial and ribosomal DNA Phytopathology 77:1289-1293 https://doi.org/10.1094/Phyto-77-1289
  12. Lee, S. B. and Taylor, J. W 1990. Isolation of DNA from fungal mycelia and single spores. In PCRprotocols: a guide to methods and applications. (M. A Innis, D. H. Gelfand, J. J. Sninsky and T. J. White, eds): 282-287. Academic Press, San Diego
  13. Manicom, B, Q. and Baayen, R. P. 1993. Restriction fragment length polymorphism in Fusarium oxyspomm f. sp. dianthi and other fusaria from Dianthus species. Plant Pathol' 42: 851-857 https://doi.org/10.1111/j.1365-3059.1993.tb02670.x
  14. Manicom, B. Q., Bar-Joseph, M., Kotze, J. M. and Becker, M. M. 1990. A restriction fragment length polymorphism probe relating vegetative compatibility groups and pathogenicity in Fusarium oxysporum f. sp. dianthi. Phytopathology 80:336-339 https://doi.org/10.1094/Phyto-80-336
  15. Manulis, S., Kogan, N., Reuven, M. and Benyephet, Y. 1994. Use of the RAPD technique for identification of Fusarium oxysporum f. sp. dianthi from carnation. Phytopathology 84: 98-101 https://doi.org/10.1094/Phyto-84-98
  16. McDonald, B. A 1997. The population genetics of fungi: tools and techniques. Phytopathology 87:448-453 https://doi.org/10.1094/PHYTO.1997.87.4.448
  17. Mes, J. J., van Doom, J., Roebroeck, E. J. A, van Egmond, E., van Aartrijk, J. and Boonekamp, P. M. 1994. Restriction fragment length polymorphisms, races and vegetative compatibility groups within a worldwide collection of Fusarium oxysporum f. sp. gladioli. Plant Pathol' 43:362-370 https://doi.org/10.1111/j.1365-3059.1994.tb02697.x
  18. Rohlf, F. J. 1990. NTSYS-pc, Numerical Taxonomy and Multivariate Analysis System, State University of New York: Stony Brook
  19. Sneath, P. H. A. and Sokal, R. R. 1973. Numerical taxonomy, W. H., Freeman and Co.: San Francisco
  20. Tantaoui, A, Quinten, M., Geiger, J. P. and Fernandez, D. 1996. Characterization of a single clonal lineage of Fusarium oxysporum f. sp. albedinis causing Bayoud disease of date palm in Morocco. Phytopathology 86:787-792 https://doi.org/10.1094/Phyto-86-787
  21. Wilhelm, S. 1984. Fusarium wilt (Yellows). In Compendium of strawberry disease. (J. L. Maas, Ed): 9798, APS Press, St. Paul
  22. Winks, B. L. and Williams, Y. N. 1965. A wilt of strawberry caused by a new form of Fusarium oxysporum. Queensland J. Agric. Animal Sci. 22:475-479
  23. Woo, S. L., Zonia, A, Del Sorbo, G, Lorito, M., Nanni, B., Scala, F. and Noviello, C. 1996. Characterization of Fusarium oxysporum f. sp. phaseoli by pathogenic races, VCGs, RFLPs and RAPD. Phytopathology 86:966-973 https://doi.org/10.1094/Phyto-86-966
  24. Woudt, L. P., Neuvel, A., Sikkema, A., Van Grisven, M. Q. J. M., de Milliano, W. A. J., Campbell, C. L. and Leslie, J. F. 1995. Genetic variation in Fusarium oxysporum from cyclamen. Phytopathology 85: 1348-1355 https://doi.org/10.1094/Phyto-85-1348
  25. YIi-Mattila, T., Paavanen-Huhtala, S., Bulat, S. A., Alekhina, I. A. and Nirenberg, H. I. 2002. Molecular, morphological and phylogenetic analysis of the Fusarium avenaceum/F. arthrospori-oides/F tricinctum species complex-a polyphasic approach. Mycol. Res. 106:655-669 https://doi.org/10.1017/S0953756202006020

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