Journal of Microbiology

  • 제42권2호
  • /
  • Pages.147-151
  • /
  • 2004
  • /
  • 1225-8873(pISSN)
  • /
  • 1976-3794(eISSN)
한국미생물학회 (The Microbiological Society of Korea)
권호 표지

Identification of $\sigma^{B}$-Dependent Promoters Using Consensus-Directed Search of Streptomyces coelicolor Genome

  • Lee, Eun-Jin (School of Biological Sciences and Institute of Microbiology, Seoul National University) ;
  • Cho, You-Hee (Department of Life Science, Sogang University) ;
  • Kim, Hyo-Sub (School of Biological Sciences and Institute of Microbiology, Seoul National University) ;
  • Roe, Jung-Hye (School of Biological Sciences and Institute of Microbiology, Seoul National University)
  • 발행 : 2004.06.01
PDF 다운로드
⟨ 이전 논문 다음 논문 ⟩

초록

$\sigma^{B}$ plays an important role in both osmoprotection and proper differentiation in Streptomyces coelicolor A3(2). We searched for candidate members of the $\sigma^{B}$ regulon from the genome database, using the consensus promoter sequence (GNNTN$_{14-16}$GGGTAC/T). The list consists of l15 genes, and includes all the known $\sigma^{B}$ target genes and many other genes whose functions are related to stress protection and dif-ferentiation.

키워드

참고문헌

  1. Microbiology. v.143 A Streptomyces griseus gene (sgaA) Suppresses the growth distrubance caused by high osmolality and d high concentration of A-factor during early growth Ando, N.;K. Ueda;S. Horinouchi https://doi.org/10.1099/00221287-143-8-2715
  2. J. Bacteriol. v.180 Identification of the gene encoding the alternative sigma factor sigmaB from Listeria monocytogenes and its role in osmotolerance Becker, L.A.;M.S Cetin;R.W. Hutkins;A.K. Benson
  3. Nature v.417 Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2) Bentley, S.D.;K.F. Chater;A.M. Cerdeno-Tarraga;G.L. Challis;N.R. Thomson;K.D. James;D.E. Harris;M.A. quail;H. Kieser;D. Harper;A. Bateman;S. Brown;G.Chandra;C.W. Chen;M. Collins;A. Cronin;A. Fraser;A. Goble;J. Hidalgo;T. Hornsby;S.Howarth;C.H. Huang;T. Kieser;L. Larke;L. Murphy;K. Oliver;S. O'Neil;E. Rabbinowitsch;,M.A. Rajandream;K. Rutherford;S. Rutter;K. Seeger;D. Saunders;S. Sharp;R. Squares;T. Squres;K. Taylor;T. Warren;A. Wietworrek;J. Woodward;B.G. Barrel;J. Parkhill;D.A. Hopwood
  4. Infect. Immun. v.68 Construction and characterization of a Mycobacterium tuberculosis muntant lacking the alternate sigma factor gene sigF Chen, P.;R.E. Ruiz;Q. Li;R.F. Silver;W.R. Bishai https://doi.org/10.1128/IAI.68.10.5575-5580.2000
  5. Mol. Microbiol. v.35 A developmentally regulated catalase required for proper differentiation and osmoprotection of Streptomyces coelicolor Cho, Y.-H.;E.-J. Lee;J.-H. Roe https://doi.org/10.1046/j.1365-2958.2000.01685.x
  6. Mol. Microbiol v.42 SigB, an RNA polymerase sigma factor required for osmoprotection and proper differentitation of Streptomyces coelicolor Cho, Y.-H.;E.-J. Lee;B,.-E. Ahn;J.-H. Roe https://doi.org/10.1046/j.1365-2958.2001.02622.x
  7. J. Bacteriol. v.182 Characterization of the operon encoding the alternative ${\sigma}^B$/ factor from Bacillus anthracis and its role in virulence Fouet, A.;O. Namy;G. Lambert https://doi.org/10.1128/JB.182.18.5036-5045.2000
  8. Methods Enztmol. v.370 Isolation and characterization of Streptomyces coelicolor RNA polymerase. its sigma, and antisigma factors Hahn, N.Y.;J.B. Bae;J.H. Park;J.H. Roe https://doi.org/10.1016/S0076-6879(03)70007-X
  9. Mol. Microbiol. v.29 Non-specific, general and multiple stress resistance of growth-restricted Bacillus subtilis cells by the expression of ${\sigma}^x$ regulon Hecker, M;U Volker https://doi.org/10.1046/j.1365-2958.1998.00977.x
  10. J. Bacteriol. v.180 Promoter recognition by Bacillus subtilis ${\sigma}^W$: autoregulation and partial overlap with the${\sigma}^x$ regulon Huang, X;K.L. Fredrick;J.D Helmann
  11. sigma W. Mol. Microbiol. v.31 Identification of target promoters for the Bacillus subrtillis extracytoplasmic function sigma factor Huang, X.;A. Gaballa;M. Cao;J.D. Helmann https://doi.org/10.1046/j.1365-2958.1999.01180.x
  12. Mol. Microbiol. v.40 A connection between stress and development in the multicellular prokaryote Streptomyces coelicolor A3(2) Kelemen, G.H.;P.H. Violler;J. Tenor;L. Marri;M.J. Buttner;C.J. Thomson https://doi.org/10.1046/j.1365-2958.2001.02417.x
  13. J. Bacteriol. v.183 Biofilm formation of Staphylococcus epidermidis depends on functional activator RsbU of the sigB operon: differential activation mechanisms due to ethanol and salt stress Knobloch, J;K.-M. Bartscht;A. Sabottke;H. Rohde;H.H. Feucht;D. Mack https://doi.org/10.1128/JB.183.8.2624-2633.2001
  14. J. Bacteriol. v.180 Delection of the alternative sigma factor sigmaB in Staphylococcus aureus reveals its function as a global regulator of virulence genes Kullik, I;P. Giachino;T. Fuchs
  15. Ph.D. Thesis. Seoul National University Regulation and the role of ${\sigma}^B$ and its related sigma factors in the differentiation and stress response of Streptomyces coelicolor Lee, E.-J.
  16. J. Bacteriol. v.183 Global ananlysis of the general stress response of Bacillus subtilis Petersonhn A.;M. Brigulla;S. Haas;J.D. Hoheisel;U. Volker;M. Hecker https://doi.org/10.1128/JB.183.19.5617-5631.2001
  17. J. Bacteriol. v.181 Identification of sigma(B)-dependent genes in Bacillus subtilis using a promoter consensusdirected search and oligonucleotide hybridization Petersohn A.;J. Bernhardt;U. Gerth;D. Hoper;T. Kobuger;U. Volker;M. Hecker
  18. Mol. Microbiol. v.42 Defining the disulphide stress response in Streptomyces coelicolor A3(2): identification of the sigmaR regulon Paget, M.S;V. Molle;G. Cohen;Y. Aharonowitz;M.J. Buttner https://doi.org/10.1046/j.1365-2958.2001.02675.x
  19. Bacterial stress responses Protective function and regulation of the general stress response in Bacillus subtilis and related gram-positive bacteria Price, C.W;G. Storz;R. Hengge-Arnois(ed.)
  20. J. Bacteriol. v.182 Alternative transcription factor ${\sigma}^B$ in involved in regulation of biofilm expression in a Staphylococcus aureus mucosal isolate Rachid, S.;K. Ohlsen;U. Walner;J. Hacker;M. Hecker;W. Ziebuhr https://doi.org/10.1128/JB.182.23.6824-6826.2000
  21. Mol. Microbiol. v.47 Specialized osmotic stress response systems involve multiple SigB-like sigma factor in Streptomyces coelicolor Violloier, P.H.;G.H. Kelemen;G.E. Dale;K.T. Nguyen;M.J. Buttner;C.J. Thomson https://doi.org/10.1046/j.1365-2958.2003.03302.x
  22. J. Bacteriol. v.180 General stress transcription factor ${\sigma}^x$ and its role in acid tolerance and virulence of Listeria monocytognes Wiedmann, M.;T.J. Arvik;R.J. Hurley;K.J. Boor