Genetic and Phenotypic Diversity of (R/S)-Mecoprop [2-(2-Methyl-4- Chlorophenoxy)Propionic Acid]-Degrading Bacteria Isolated from Soils

  • Lim, Jong-Sung (School of Agricultural Biotechnology, Seoul National University) ;
  • Jung, Mee-Kum (School of Agricultural Biotechnology, Seoul National University) ;
  • Kim, Mi-Soon (School of Agricultural Biotechnology, Seoul National University) ;
  • Ahn, Jae-Hyung (School of Agricultural Biotechnology, Seoul National University) ;
  • Ka, Jong-Ok (School of Agricultural Biotechnology, Seoul National University)
  • Published : 2004.06.01

Abstract

Twelve mecoprop-degrading bacteria were isolated from soil samples, and their genetic and phenotypic characteristics were investigated. Analysis of 16S rDNA sequences indicated that the isolates were related to members of the genus Sphingomonas. Ten different chromosomal DNA patterns were obtained by polymerase-chain-reaction (PCR) amplification of repetitive extragenic palindromic (REP) sequences from the 12 isolates. The isolates were found to be able to utilize the chiral herbicide meco-prop as a sole source of carbon and energy. While seven of the isolates were able to degrade both (R)-and (S)-mecoprop, four isolates exhibited enantioselective degradation of the (S)-type and one isolate could degrade only the (R)-enantiomer. All of the isolates were observed to possess plasmid DNAs. When certain plasmids were removed from isolates MPll, MP15, and MP23, those strains could no longer degrade mecoprop. This compelling result suggests that plasmid DNAs, in this case, conferred the ability to degrade the herbicide. The isolates MP13, MP15, and MP24 were identified as the same strain; however, they exhibited different plasmid profiles. This indicates that these isolates acquired dif-ferent mecoprop-degradative plasmids in different soils through natural gene transfer.

Keywords

References

  1. The Chemistry and Mode of Action of Plant Growth Substances On the effects of para-substitution in some plant growth regulators with phenyl nuclei Aberg, B;R.L. Wain(ed.);F. Wighman(ed.)
  2. J. Agric. Food Chem v.9 Effect of chemical structure on microbial decomposition of aromatic herbicides Alexander, M;M.I.H. Aleem https://doi.org/10.1021/jf60113a012
  3. J. Mol. Biol. v.215 Basic local alignment tool Altschul, S.F.;W. Gish;W. Miller;E.W. Myers;D.J. Lipman
  4. FEMS Microbiol. Lett. v.138 Rapid, direct extraction of DNA from soils for PCR analysis using polyvinylpolypyrrolidone spin columns Berthelet, M.;L.G. Whyte;C.W. Greer https://doi.org/10.1111/j.1574-6968.1996.tb08128.x
  5. J. Microbiol. v.36 no.4 Isolation and characterization of 2,4-dichlorophenoxyacetic acid-degrading bacteria from paddy soils Chung, M.J.; J.O. Ka
  6. Plasmids, Am. Soc. Microbiol Methods for General and Molecular Bacteriology Crosa, J.H.;M.E. Tolmasky;L.A. Actis;S. Falkow;P. Gerhardt(ed.);R.G.E. Murray(ed.);W.A. Wood(ed.);N.R. Krieg(ed.)
  7. Appl. Environ. Microbiol. v.58 Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium mililoti isolates and other soil bacteria de Bruijin, F.J
  8. J. Bachteriol. v.161 Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134(pJP4) Don, R.H.; A.J. Weightman;H.-J Knackmuss;K.N. Timmis
  9. Chemosphere v.24 Degradation of the herbicide mecoprop in an aerobic aquifer determined by laboratory batch studies Heron, G.;T.H. Christensen https://doi.org/10.1016/0045-6535(92)90211-9
  10. Appl. Microbiol. Biotechnol. v.33 Isolation and characterization of a2-(2,4-dichlorophenoxy)propionic acid-degrading soil bacterium Horvath, M.;G. Ditzelmuller;M. Loidl;F. Streichsbier
  11. J. Bacteriol. v.180 Novel division level bacterial diversity in a Yellowstone hot spring Hugenholtz, P.;C. Pitulle;K.L. Herchberger;N.R. Pace
  12. Appl. Eviron. Microbiol. v.60 Genetic and phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils Ka, J.O.;W.E. Holben;J.M. Tiedje
  13. J. Bacteriol. v.176 Intergration and excision of a 2,4-dichlorophenxyacetic acid-degradative plasmid in Alcaligenes paradoxus and evidence of its natural intergeneric transfer Ka, J.O.;J.M. Tiedje
  14. J.Bacteriol. v.145 Rapid procedure for detection and isolation of large and small plasmids Kado, C.I.;S.T. Liu
  15. Appl. Environ. MicroBiol. v.63 Pristine environments harbor a new group of oligotrophic 2,4-dichlorophenoxyacetic acid-degrading bacteria Kamagata, Y.;R.A. Fulthorpe;K. Tamura;H. Takami;L.J. Forney;J.M Tiedje
  16. Nucleic Acid Techniques in Bacterial Systematics 16S/23S rRNA sequencing Lane, D.J.;E. Stackebrandt(ed.);M. Goodfellow(ed.)
  17. Appl. Environ. Microbiol. v.49 Degradataion of the herbicide mecoprop [2-(2-methy1-4-chlorophenoxy)propionic acid] by a synergistic microbial community Lappin, H.M.;M.P. Greaves;J.H. Slater
  18. Can. J. Microbiol. v.13 Phenols as intermediates in the decomposition of phenoxyacetates by an Arthrobacter species Loos, M.A.;R.N. Roberts;M. Alexander https://doi.org/10.1139/m67-090
  19. Nucleic Acid Res. v.28 no.1 The RDP(Ribosomal Database Prosect) Continues Maidak, B.L.;J.R. Cole;T.G. Lilburn;C.T. Parker Jr.;P.R. Saxman;J.M. Stredwick;G.M. Garrity;B. Li;G.J. Olsen;S. Pramanik;T.M. Schmidt;J.M. Tiedje https://doi.org/10.1093/nar/28.1.173
  20. Environ. Sci. Technol. v.31 Conversion reaction of various phenoxyalkanoic acid herbicides in soil. 1. Enantiomerization and enantioselective degradation of the chiral 2-phenoxypropionic acid herbicides Muller, M.D.;H. Buser https://doi.org/10.1021/es960782p
  21. J. Microbiol. v.41 no.1 Genetic and phenotypic diversity of dichlorprop-degrading bacteria isolated from soils Park, H.D.;J.O. Ka.
  22. Plasmids of Medical, Environmental and Commercial Importance Evolution and spread of pesticide degrading ability among soil microorganisms Pemberton, J.M.;B. Corney;R.H. Don;K.N Timmis(ed.);A. Puhler(ed.)
  23. Arch. Microbiol. v.150 Metabolism of 2,4-dichlorphenoxyacetic acid by Alcaligenes eutrophus JMP134 Pieper,D.H;W. Reineke;K.-H. Engesser;H.-J. Knackmuss https://doi.org/10.1007/BF00409724
  24. J. Environ. Qual. v.20 Effects of long-term 2,4-D and MCPA field applications on the soil breakdown of 2,4-D,MCPA, mecoprop, and 2,4,5-T Smith, A.E.;A.J. Aubin https://doi.org/10.2134/jeq1991.00472425002000020016x
  25. Weed Res. v.21 Relative persistence of MCPA, MCPB and mecoprop in Saskatchewan soils Smith, A.E.;B.J. Hayden https://doi.org/10.1111/j.1365-3180.1981.tb00114.x
  26. FEMS Microbiol. Ecol. v.14 Enantioselecitve degradation of the herbicide mecoprop [2-(2-methy1-4-chlorophenoxy) propionic acid] by mixed and pure bacterial cultures Tett, V.A.;A.J. Willetts.;H.M. Lappin-Scott https://doi.org/10.1111/j.1574-6941.1994.tb00105.x
  27. Weed Res. v.15 The effect of repeated applications of 2,4-D and MCPA on their breakdown in soil Torstensson, N.T.L.;J. Stark;B. Goransson https://doi.org/10.1111/j.1365-3180.1975.tb01116.x
  28. FEMS Microbiol. Ecol. v.20 The metabolic pathway of 2,4-dichlorophenoxyacetic acid degradation involves different families of tfdA and tfdB genes according to PCR-RFLP analysis Vallaeys,T.;R.R. Fulthorpe;A.M. Wright;G. Soulas https://doi.org/10.1111/j.1574-6941.1996.tb00315.x
  29. Methods Mol. Cell Biol. v.5 Genomic fingerprinting of bacteria using repetitive sequencebased polymerase chain reaction Versalovic, J.;M. Schneider;F.J. de Bruijn;J.R. Lupski
  30. Methods Microbiol. v.21 Conjugation Willetts, N.S. https://doi.org/10.1016/S0580-9517(08)70070-9
  31. Appl. Environ. Microbiol v.62 Complete microbial degradation of both enantiomers of the chiral herbicide mecoprop ((RS)-2-(4-chloro-2-methy1phenoxy) propionoc acid) in an enantioselective manner by Sphingonmonas herbicidovorans sp. nov. Zipper, C.;K. Nickel;W. Angst;H.-P.E. Kother