Biotechnology and Bioprocess Engineering:BBE

  • 제9권2호
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  • Pages.69-75
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  • 2004
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  • 1226-8372(pISSN)
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  • 1976-3816(eISSN)
한국생물공학회 (The Korean Society for Biotechnology and Bioengineering)
권호 표지

Protein Microarrays and Their Applications

  • Lee, Bum-Hwan (Digital Bio Technology) ;
  • Teruyuki Nagamune (Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo)
  • 발행 : 2004.03.01
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초록

In recent years, the importance of proteomic works, such as protein expression, detection and identification, has grown in the fields of proteomic and diagnostic research. This is because complete genome sequences of humans, and other organisms, progress as cellular processing and controlling are performed by proteins as well as DNA or RNA. However, conventional I protein analyses are time-consuming; therefore, high throughput protein analysis methods, which allow fast, direct and quantitative detection, are needed. These are so-called protein microarrays or protein chips, which have been developed to fulfill the need for high-throughput protein analyses. Although protein arrays are still in their infancy, technical development in immobilizing proteins in their native conformation on arrays, and the development of more sensitive detection methods, will facilitate the rapid deployment of protein arrays as high-throughput protein assay tools in proteomics and diagnostics. This review summarizes the basic technologies that are needed in the fabrication of protein arrays and their recent applications.

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참고문헌

  1. Science v.270 Quantitative monitoring of gene-expression patterns with a complementary-DNA microarray Schena,M.;D.Shalon;R.W.Davis;P.O.Brown https://doi.org/10.1126/science.270.5235.467
  2. Science v.274 Accessing genetic information with high-density DNA arrays Chee,M.;R.Yang;E.Hubbell;A.Berno;X.C.Huang;D.Stern;J.Winkler;D.J.Lockhart;M.S.Morris;S.P.A.Fodor https://doi.org/10.1126/science.274.5287.610
  3. Biotechniques v.29 FAST^{TM}$ slides: A novel surface for microarrays Stillman,B.A.;J.L.Tonkinson
  4. Anal. Biochem. v.306 Protein microarrays to detect protein-protein interactions using red and green fluorescent proteins Kukar,T.;S.Eckenrode;Y.R.Gu;W.Lian;M.Megginson;J.X.She;D.H.Wu https://doi.org/10.1006/abio.2002.5614
  5. Science v.289 Printing Proteins as microarrays for high-throughput function determination MacBeath,G.;S.L.Schreiber
  6. Biomaterials v.19 Protein patterning Blaws,A.S.;W.M.Reichert https://doi.org/10.1016/S0142-9612(97)00218-4
  7. Anal. Chem. v.68 A novel method of immobilizing antibodies on a quartz crystal microbalance using plasma-ploymerized films for immunosensors Nakanishi,K.;H.Muguruma;I.Karube https://doi.org/10.1021/ac950756u
  8. Biosens. Bioelectron. v.12 Antibody immobilization using heterobifunctional crosslinkers Shriver-Lake,L.C.;B.Donner;R.Edelstein;K.Breslin;S.K.Bhatia;F.S.Ligler https://doi.org/10.1016/S0956-5663(97)00070-5
  9. Anal. Chem. v.69 Generation of biotin/avidin/enzyme nanostructures with maskles photolithography Dontha,N;W.B.Nowall;W.G.Kuhr https://doi.org/10.1021/ac9702094
  10. Anal. Chem. v.67 Patterning and regeneration of surfaces with antibodies Pritchard,D.J.;H.Morgan;J.M.Cooper https://doi.org/10.1021/ac00115a034
  11. Chemtech. v.29 Create a protein microarray using a hydrogel "stamper" Gaber,B.P.;B.D.Martin;D.C.Turner
  12. Science v.293 Global analysis of protein activities using proteome chips Zhu,H.;M.Bilgin;R.Bangham;D.Hall;A.Casamayor;P.Bertone;N.Lan;R.Jansen;S.Bidlingmaier;T.Houfek;T.Mitchell;P.Miller;R.A.Dean;M.Gerstein;M.Snyder https://doi.org/10.1126/science.1062191
  13. Anal. Chem. v.74 Enhanced affinity capture MALDI-TOF MS: Orientation of an immunoglobulin G using recombinant protein G Neubert,H.;E.S.Jacoby;S.S.Bansal;R.K.Iies;D.A.Cowan;A.T.Kicman https://doi.org/10.1021/ac025558z
  14. Anal. Biochem. v.312 Optimizing antibody immobilization strategies for the construction of protein arrays Peluso,P.;D.S.Wilson;D.Do;H.Tran;M.Venkatasubbajah;D.Quincy;B.Heidecker;K.Poindexter;N.Tolani;M.Phelan;K.Witte;L.S.Jung;P.Wagner;S.Nock https://doi.org/10.1016/S0003-2697(02)00442-6
  15. Anal. Chem. v.66 A novel immunosensor for herpes virus Konig,B.;M.Gratzel https://doi.org/10.1021/ac00075a005
  16. J. Chromatogr. B v.722 Oriented immobilization of biologically active proteins as a tool for revealing protein interactions and function Turkova,J. https://doi.org/10.1016/S0378-4347(98)00434-4
  17. Biosens. Bioelectron. v.12 Effectiveness of protein A for antibody immobilization for a fiber optic biosensor Anderson,G.P.;M.A.Jacoby;F.S.Ligler;K.D.King https://doi.org/10.1016/S0956-5663(96)00074-7
  18. Biosens. Bioelectron. v.15 Evaluation of antibody immobilization methods for piezoelectric biosensor application Babacan,S.;P.Pivarnik;S.Letcher;A.G.Rand https://doi.org/10.1016/S0956-5663(00)00115-9
  19. Analyst v.121 Oriented immobilization of antibodies and its applications in immunoassays and immunosensors Lu,B.;M.R.Smyth;R.O'Kennedy https://doi.org/10.1039/an996210029r
  20. J. Chromatogr. A v.500 Carbohydrates as a tool for oriented immobilization of antigens and antibodies Turkova,J.;L.Petkov;J.Sajdok;J.KaM;J.Bene https://doi.org/10.1016/S0021-9673(00)96093-X
  21. J. Chromatogr. A v.597 Galactosylation as a tool for the stabilization and immobilization of proteins Turkova,J.;S.Vohnik;M.Helusova;J.Bene;M.Ticha https://doi.org/10.1016/0021-9673(92)80093-A
  22. Annu. Rev. Biomed. Eng. v.4 DNA microtechnology: Devices, systems, and applications Heller,M.J. https://doi.org/10.1146/annurev.bioeng.4.020702.153438
  23. Annu. Rev. Physiol. v.65 Application of microarray technology in environmental and comparative physiology Gracey,A.Y.;A.R.Cossins https://doi.org/10.1146/annurev.physiol.65.092101.142716
  24. Vaccine v.20 Gene expression microarray: a 21st century tool for directed vaccine design Dhiman,N.;R.Bonilla;D.O'Kane;G.A.Poland https://doi.org/10.1016/S0264-410X(01)00319-X
  25. Proc. Natl. Acad. Sci. USA v.93 Patterning of functional antibodies and other proteins by photolithography of silane monolayers Mooney,J.F.;A.J.Hunt;J.R.McIntosh;C.A.Liberko;D.M.Walba;C.T.Rogers https://doi.org/10.1073/pnas.93.22.12287
  26. Biophys. J. v.70 A general technique for patterning of functional proteins with photolithography of silane monolayers Mooney,J.F.;C.T.Rogers;A.J.Hunter;J.R.McIntosh
  27. Stem Cells v.21 Designing, testing, and validating a focused stem cell microarray for characterization of neutral stem cells and progenitor cells Luo,Y.Q.;J.G.Cai;I.Ginis;Y.Y.Sun;S.L.Lee;S.X.Yu;A.Hoke;M.Rao https://doi.org/10.1634/stemcells.21-5-575
  28. Langmuir v.14 Printing patterns of proteins Bernard,A.;E.Delamarche;H.Schmid;B.Michel;H.R.Bosshard;H.Biebuyck https://doi.org/10.1021/la980037l
  29. Adv. Mater. v.13 Hydrophilic poly(dimethylsiloxane) stamps for microcontact printing Delamarche,E.;M.Geissler,M.;A.Bernard;H.Wolf;B.Michel;J.Hilborn;C.Donzel https://doi.org/10.1002/1521-4095(200108)13:15<1164::AID-ADMA1164>3.0.CO;2-S
  30. Cell Biol. Toxicol. v.19 Development of protein microarray technology to monitor biomarkers of rheumatoid arthritis disease Urbanowska,T.;S.Mangialaio;C.Hartmann;E.Legay https://doi.org/10.1023/A:1024729526867
  31. Anal. Chim. Acta v.262 Ink-jet printing for the fabrication of amerometric glucose biosensors Newman;J.D.;A.F.P.Turner;G.Marrazza https://doi.org/10.1016/0003-2670(92)80002-O
  32. Biotechniques v.28 Protein microdeposition using a conventional ink-jet printer Roda,A.;M.Gardigli;C.Russo;P.Pasini;M.Baraldini
  33. Langmuir v.19 Characterization of aptterned self-assembled monolayers and protein arrays generated by the ink-jet method Pardo,L.;W.C.Wilson;T.J.Boland https://doi.org/10.1021/la026171u
  34. Zool. Sci. v.20 Growth factor array fabrication using a color ink jet printer Watanabe,K.;T.Miyazaki;R.Matsuda https://doi.org/10.2108/zsj.20.429
  35. J. Neurosci. Meth. v.131 Ink-jet printing for micropattern generation of laminin for neuronal adhesion Turcu,F.;K.Tratsk-Nitz;S.Thanos;W.Schuhmann;P.Hieduschka https://doi.org/10.1016/j.jneumeth.2003.08.001
  36. J. Chem. Eng. Jap. v.36 Fabrication of protein microarrays for immunoassay using the electropray deposition (ESD) method Lee,B.H.;J.W.Kim;K.Ishimoto;Y.Yamagata;A.Tanioka;T.Nagamune https://doi.org/10.1252/jcej.36.1370
  37. Luminescence v.18 Analysis of several fluorescent detector molecules for protein microarray use Wiese,R. https://doi.org/10.1002/bio.697
  38. Biosens. Bioelectron. v.15 A liquid crystal pixel array for signal discrimination in array biosensors Lundgren,J.S.;A.N.Watkins;D.Racz;F.S.Ligler https://doi.org/10.1016/S0956-5663(00)00098-1
  39. Faraday Discuss v.111 Functional immobilization of biomemrane fragments on planar waveguides for the investigation of side-directed ligand binding by surface-confined fluorescence Pawlak,M.;E.Grell;E.Schick;D.Anselmetti;M.Ehrat https://doi.org/10.1039/a806704j
  40. Anal. Chem. v.71 Array biosensor for simultaneous identification of bacterial, viral, and protein analyte Rowe,C.A.;L.M.Tender;M.J.Feldstein;J.P.Golden;S.B.Scruggs;B.D.MacCraith;J.J.Cras;F.S.Ligler https://doi.org/10.1021/ac981425v
  41. Anal. Chem. v.71 An array immunosensor for simultaneous detection of clinical analyte Rowe,C.A.;S.B.Scruggs;M.J.Feldstein;J.P.Golden;F.S.Ligler https://doi.org/10.1021/ac980798t
  42. Biosens. Bioelectron. v.15 Simultaneous detection of six biohazardous agents using a planar waveguide array biosensor Rowe,C.A.;J.W.Hazzard;K.E.Hoffman;J.J.Cras;J.P.Golden;F.S.Ligler https://doi.org/10.1016/S0956-5663(00)00122-6
  43. Sens. Actuators B v.38 Novel bioaffinity sensors for trace analysis based on luminescence excitation by planar waveguides Dubeneck,G.L.;M.Pawlak;D.Neuschaefer https://doi.org/10.1016/S0925-4005(97)80176-1
  44. Pharmacogenomics v.1 Recent trends in protein biochip technology Weinberger,S.R.;T.S.Morris;M.Pawlak https://doi.org/10.1517/14622416.1.4.395
  45. Nat. Genet. v.19 Mutation detection and single-molecule counting using isothermal rolling-circle amplification Lizardi,P.M.;X.H.Huang;Z.R.Zhu;P.Bray-Ward;D.C.Thomas;D.C.Ward https://doi.org/10.1038/898
  46. Proc. Natl. Acad. Sci. USA v.97 Immunoassays with rolling circle DNA amplification: A versatile platform for ultrasensitive antigen detection Schweitzer,B.;S.Wiltshire;J.Lambert;S.O'Malley;K.Kukanskis;Z.R.Zhu;S.F.Kingsmore;P.M.Lizardi;D.C.Ward https://doi.org/10.1073/pnas.170237197
  47. Nat. Biotechnol. v.20 Multiplexed protein profiling on microarrays by rolling-circle amplification Schweitzer,B.;S.Roberts;B.Grimwade;W.P.Shao;M.J.Wang;Q.Fu;Q.P.Shu;I.Laroche;Z.M.Zhou;V.T.Tchernev;J.Chrstiansen;M.Velleca;S.F.Kingsmore https://doi.org/10.1038/nbt0402-359
  48. Anal. Biochem. v.294 Simultaneous detection of multiple cytokines from conditioned media a patient's sera by an antibody-based protein array system Huang,R.P.;R.C.Huang;Y.Fan;Y.Lin https://doi.org/10.1006/abio.2001.5156
  49. Anal. Chem. v.65 Ultrasensitive heterogeneous immunoassay using photothermal deflection spectroscopy Tu,C.Y.;T.Kitamori;T.Sawada
  50. Anal. Chem. v.72 Integration of an immunoabsorbent assay system: analysis of secretory human immunoglobulin A on polystyrene beads in a microchip Sato,K.;M.Tokeshi;T.Odake;H.Kimura;T.Oosi;M.Nakao;T.Kitamori https://doi.org/10.1021/ac991151r
  51. Anal. Chem. v.73 Determination of carcinoembryonic antigen in human sera by intergrated bead-bed immunoassay in a microchip for cancer diagnosis Sato,K.;M.Tokeshi;H.Kimura;T.Kitamori https://doi.org/10.1021/ac000991z
  52. Anal. Chem. v.73 Assay of spherical cell surface molecules by thermal lens microscopy and its application to blood cell substances Kimura,H.;K.Sekiguchi;T.Kitamori;T.Sawada;M.Mukaida https://doi.org/10.1021/ac010257v
  53. Clin. Chem. v.44 Mass-sensing, multianalyte microarray immunoassay with imaging detection Silzel,J.W.;B.Cercek;C.Dodson;T.Tsay;R.J.Obremski
  54. Eletrophoresis v.21 A microarray enzymelinked immunosorbent assay for autoimmune diagnostics Joos,T.O.;M.Schrenk;P.Hopfl;K.Kroger;U.Chowdhury;D.Stoll;D.Schorner;M.Durr;K.Herick;S.Rupp;K.Sohn;H.Hammerle https://doi.org/10.1002/1522-2683(20000701)21:13<2641::AID-ELPS2641>3.0.CO;2-5
  55. Clin. Exp. Allergy v.33 Microarrayed recombinant allergens for diagnosis of allergy Harwanegg,C.;S.Laffer;R.Hiller;M.W.Mueller;D.Kraft;S.Spitzauer;R.Valenta https://doi.org/10.1046/j.1365-2222.2003.01550.x
  56. Anal. Chem. v.75 Microarrays for the screening of allergen-specific IgE in human serum Barbara,I.;B.Eberlein-Konig;H.Behrendt;R.Niessner;J.Ring;M.G.Weller https://doi.org/10.1021/ac026016k
  57. Clin. Chem. Lab. Med. v.39 Simultaneous detection of multiple proteins with an array-based enzyme-linked immunosorbent assay (ELISA) and enhanced chemiluminescence (ECL) Huang,R.P. https://doi.org/10.1515/CCLM.2001.032
  58. J. Proteome Res. v.1 Array-based multiplexed screening and quantitation of human cytokines and chemokines Wang,C.C.;R.P.Huang;M.Sommer;H.Lioukov;R.C.Huang;Y.Lin;T.Miller;J.Burke https://doi.org/10.1021/pr0255203
  59. Cancer Res. v.61 Immunophenotype of leukemias using a cluster of differentiation antibody microarray Belov,L.;O.de la Vega;C.G.dos Remedios;S.P.Mulligan;R.I.Christopherson
  60. Proteomics v.3 Identification of repertoires of surface antigens on leukemias using an antibody microarray Belov,L.;P.Huang;N.Barber;S.P.Mulligan;R.I.Christopherson https://doi.org/10.1002/pmic.200300599
  61. Proteomics v.3 Antibody microarray profiling of human prostate cancer sera: Antibody screening and identification of potential biomarkers Miller,J.C.;H.P.Zhou;J.Kwekel;R.Cavallo;J.Burke;E.B.Butler;B.S.The;B.B.Haab https://doi.org/10.1002/pmic.200390009