DOI QR코드

DOI QR Code

Comparison of Gene Expression Patterns in Longissimus dorsi of Pigs between the High-parent Heterosis Cross Combination andrace×Large White and the Mid-parent Heterosis Cross Combination Large White×Meishan

  • Liu, G.Y. (Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture, Huazhong Agricultural University) ;
  • Xiong, Y.Z. (Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture, Huazhong Agricultural University) ;
  • Deng, C.Y. (Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture, Huazhong Agricultural University) ;
  • Zuo, B. (Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture, Huazhong Agricultural University) ;
  • Zhang, J.H. (Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture, Huazhong Agricultural University)
  • Received : 2003.09.09
  • Accepted : 2004.05.20
  • Published : 2004.09.01

Abstract

In order to detect the molecular mechanism of heterosis in pigs, the mRNA differential display technique was performed to investigate the differences in gene expression of pig's Longissimus dorsi between the high-parent heterosis cross combination Landrace${\times}$Large White and the mid-parent heterosis cross combination Large White${\times}$Meishan. Three pig purebreds, Large White, Meishan, and Landrace and four types of reciprocal $F_1$ hybrids were analyzed using nine 3'-end anchored primers in combination with ten 5'-end arbitrary primers and nearly 7,000 reproducible bands were examined. The patterns of gene expression of each cross combination were analyzed and eight common patterns (fifteen kinds) were found. When the results from the two cross combinations were put together and compared, eight different typical expression patterns were observed, these indicated that the patterns of gene expression of these two cross combinations had obvious differences. Gene expression correlation and cluster analyses of the two cross combinations indicated that the gene expression of the mid-parent heterosis cross combination was correlated with maternal effect, but in the high-parent heterosis cross combination, paternal effect acted in the gene expression of the hybrids or the gene expression of the hybrids was biased towards one parent.

Keywords

References

  1. Davenport, C. B. 1908. Degeneration, albinism and inbreeding. Science. 28:454-455.
  2. East, E. M. 1908. Report of the Connecticut Agricultural Experimental Station for Years 1907-1908. 419-428.
  3. Hua, J., Y. Xing, W. Wu, C. Xu, X. Sun, S. Yu, Q. Zhang. 2003. Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid. Proc. Natl. Acad. Sci. USA. 100: 2574-2579.
  4. Liang, P. and A. B. Pardee. 1992. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257:967-971.
  5. Liang, P., L. Averboukh and A. B. Pardee. 1993. Distribution and cloning of eukaryotic mRNAs by means of differential display: refinements and optimization. Nucleic Acids Res. 21:3269-3275.
  6. Linskens, M. H. 1995. Cataloging altered gene expression in young and senescent cells using enhanced differential display. Nuclei Acids Res. 23:3244-3251. https://doi.org/10.1093/nar/23.16.3244
  7. Lu, H., J. Romero-Severson and R. Bernardo. 2003. Genetic basis of heterosis explored by simple sequence repeat markers in a random-mated maize population. Theor. Appl. Genet. 107:494-502.
  8. Pan, Peiwen. 2002. Isolation, characterization and mapping of differentially expressed EST from porcine skeletal in different breeds or developing stages. Ph.D. Thesis, Huazhong Agricultural University, Wuhan, China.
  9. Pan, P. W., S. H. Zhao, M. Yu, T. A. Xiong and K. Li. 2003. Identification of Differentially Expressed Genes in the Longissimus Dorsi Muscle Tissue between Duroc and Erhualian Pigs by mRNA Differential Display. Asian-Aust. J. Sci. Vol 16, No.7:1066-1070.
  10. Shull, G. H. 1908. The composition of a field of maize. American Breeders' Association Report 4:296-301.
  11. Wu, L. M., Z. F. Ni, Z. K. Wang, Z. Lin and Q. X. Sun. 2001. Relationship between differential expression patterns of multigene families and heterosis in a wheat diallel crosses. Yi Chuan Xue Bao. 28:256-266.
  12. Xiao, J., J. Li, L. Yuan and S. D. Tanksley. 1995. Dominance as the major genetic basis of heterosis in rice. Proceedings of the Third International Rice Genetics Symposium, Manila (Philippines).
  13. Xie, X. D., Z. F. Ni, F. R. Meng, L. M. Wu, Z. K. Wang and X. Sun. 2003. Relationship between differences of gene expression in early developing seeds of hybrid versus parents and heterosis in wheat. Yi Chuan Xue Bao. 30:260-266.
  14. Yamazaki, M. and K. Saito. 2002. Differential display analysis of gene expression in plants. CMLS, Cell. Mol. Life Sci. 59:1246-1255.
  15. Yu, S. B., J. X. Li, C. G. Xu, Y. F. Tan, Y. J. Gao, X. H. Li, Qifa Zhang and M. A. Saghai Maroof. 1997. Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid. Genetics. 94: 9226-9231.

Cited by

  1. , differentially expressed in the Longissimus dorsi muscle tissues from Meishan, Meishan × Large White cross and Large White pigs vol.18, pp.6, 2007, https://doi.org/10.1080/10425170701243328
  2. Isolation, sequence analysis and expression profile of a novel porcine gene, NIP7, differentially expressed in the Longissimus dorsi muscle tissues from Meishan, Meishan × Large White cross and Large White pigs vol.34, pp.4, 2007, https://doi.org/10.1007/s11033-006-9035-5
  3. vol.57, pp.1, 2007, https://doi.org/10.1080/09064700701335936
  4. Isolation, sequence identification and tissue expression distribution of three novel porcine genes—RAB14, S35A3 and ITM2A vol.35, pp.2, 2008, https://doi.org/10.1007/s11033-007-9071-9
  5. Molecular characterization of the encoding regions and tissue expression analyses for three novel porcine genes––HNRPA1, YIPF5 and UB2D2 vol.35, pp.4, 2008, https://doi.org/10.1007/s11033-007-9117-z
  6. Cloning, sequence characterization, and tissue expression profile analysis of three novel porcine genes—RHOB, RHOG, and PRAF1 vol.42, pp.1, 2008, https://doi.org/10.1134/S002689330801007X
  7. Molecular characterization and expression profile of a novel porcine gene differentially expressed in the muscle and backfat tissues from Chinese Meishan and Russian Large White pigs vol.42, pp.4, 2008, https://doi.org/10.1134/S0026893308040031
  8. Isolation, sequence identification and tissue expression profiles of 3 novel porcine genes:ASPA, NAGA, andHEXA vol.49, pp.3, 2008, https://doi.org/10.1007/BF03195622
  9. A porcine gene, PBK, differentially expressed in the longissimus muscle from Meishan and Large White pig vol.32, pp.4, 2009, https://doi.org/10.1590/S1415-47572009000400017
  10. Molecular characterization and expression profile of a novel porcine gene differentially expressed in the muscle tissues from Meishan, Large White and their hybrids vol.36, pp.1, 2009, https://doi.org/10.1007/s11033-007-9151-x
  11. Molecular cloning and expression analyses of a novel swine gene-ARF4 vol.36, pp.3, 2009, https://doi.org/10.1007/s11033-007-9201-4
  12. cDNA cloning, sequence identification and tissue expression distribution of three novel porcine genes: UCHL3, RIT1 and CCND3 vol.36, pp.3, 2009, https://doi.org/10.1007/s11033-008-9209-4
  13. Molecular cloning, sequence identification, and tissue expression profile analysis of three novel porcine genes: SDHB, SNRPA and CRYBB1 vol.36, pp.4, 2009, https://doi.org/10.1007/s11033-008-9229-0
  14. Molecular cloning, polymorphism and association analyses of a novel porcine mRNA differentially expressed in the Longissimus muscle tissues from Meishan and Large White pigs vol.36, pp.6, 2009, https://doi.org/10.1007/s11033-008-9326-0
  15. Molecular cloning, polymorphism and association analyses of a novel differentially expressed porcine mRNA vol.36, pp.8, 2009, https://doi.org/10.1007/s11033-008-9445-7
  16. Isolation, sequence identification, and tissue expression profile of 3 novel porcine genes:NCF2, BCKDHB andBCKDHA vol.50, pp.1, 2009, https://doi.org/10.1007/BF03195651
  17. A novel sheep gene,MMP7, differentially expressed in muscles from black-boned sheep and local common sheep vol.50, pp.3, 2009, https://doi.org/10.1007/BF03195680
  18. A Novel Porcine Gene-erlin2, Differentially Expressed in the Liver Tissues from Meishan and Large White Pigs vol.160, pp.4, 2010, https://doi.org/10.1007/s12010-009-8644-6
  19. Differential display reveals a novel pig gene, PRPF3, which is differentially expressed in Large White versus Wujin skeletal muscle tissues vol.37, pp.6, 2010, https://doi.org/10.1007/s11033-009-9799-5
  20. Isolation, nucleotide identification and tissue expression of three novel ovine genes—SLC25A4, SLC25A5 and SLC25A6 vol.37, pp.6, 2010, https://doi.org/10.1007/s11033-009-9812-z
  21. A novel porcine gene, MAPKAPK3, is differentially expressed in the pituitary gland from mini-type Diannan small-ear pigs and large-type Diannan small-ear pigs vol.37, pp.7, 2010, https://doi.org/10.1007/s11033-009-9921-8
  22. Isolation, sequence identification and expression profile of three novel genes Rab2A, Rab3A and Rab7A from black-boned sheep (Ovis aries) vol.44, pp.1, 2010, https://doi.org/10.1134/S0026893310010036
  23. A novel porcine gene, LIPC, differentially expressed in the liver tissues from Meishan and Large White pigs vol.52, pp.2, 2011, https://doi.org/10.1007/s13353-011-0032-6
  24. The influence of housing and feeding systems on selected fattening and slaughter parameters of finishing pigs with different genotypes vol.58, pp.10, 2018, https://doi.org/10.1071/AN16390
  25. Isolation, cloning and sequence analysis of differentially expressed genes in the backfat tissue between hybrids and parents in pigs vol.3, pp.1, 2004, https://doi.org/10.1079/cjb200592
  26. Isolation, identification and expression profile of fourteen differentially expressed sequence tags in the longissimus dorsi muscle tissues from Meishan, Meishan×Large White cross and Large Whit vol.4, pp.1, 2004, https://doi.org/10.1017/s1479236207001209
  27. Association of Single Nucleotide Polymorphisms in Exon 3 of Porcine LMCD1 Gene with Meat Quality and Carcass Traits vol.7, pp.3, 2004, https://doi.org/10.1016/s1671-2927(08)60078-4