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한국산 잇바디돌김 (Porphyra dentata)의 핵 18S rDNA 염기선열 분석

Sequence Analysis of Nuclear 18s rDNA from Porphyra dentata (Rhodophyta) in Korea

  • 발행 : 2002.08.01

초록

잇바디돌김(Porptyra dentata)을 대상으로 핵의 18S ribo-somal RNA를 지령하는 유전자 즉 18S rDNA 유전자를 증폭하고, 염기서열분석을 수행하였다. 전체 18S rDNA의 exon 영역 크기는 1822 bp, intron 영역의 크기는 512 bp였다. 이들 exon과 intron 영역의 G+C함량은 각각 49%와 55%씩 나타내었다. 일본산 잇바디돌김(CenBank accession number: AB013183)의 exon 영역과의 비교에서 상동성이 97.1%에 도달하였다. 568번과 569번 염기사이의 upstream에 위치하는 intron 영 역에서는 AB013183과 52.1%의 상동성을 보였다.

Nuclear 18S ribosomal RNA gene (18S rDNA or SSU rDNA) from the Porphyra dentata tissue was amplified and sequenced. Complete 18S rDNA has an 1822 bp exon and a 512 bp intron. The G+C contents of exon and intron were 49% and 55%, respectively. The exon sequence showed 97.1% homology to the GenBank accession number AB013183 of the Japanese P. dentata. The intron region that is inserted in upstream between 568 and 569 showed 52.1% homology to the AB013183.

키워드

참고문헌

  1. J.Mol.Biol v.215 Basic local alignement search tool. Altschul,S.F.;W.Gish;W.Miller; E.W.Mayers;D.J.Limpman https://doi.org/10.1016/S0022-2836(05)80360-2
  2. Nucl. Acids. Res. Inc v.25 Gapped BLAST and PSI-BLAST:a new generation of protein database search programs Altschul,S.F.;T.L.Madden;A.A.Schaffer;J.Zhang;W.Miller;D.J.Limpman https://doi.org/10.1093/nar/25.17.3389
  3. Introduction or the Algae Bold,H.C.;M.J.Wynne
  4. J.Appl.Phycol. v.7 DNA extraction conditions from Porphyra perforata using LiCi Hong,Y.K.;S.D.Kim;M.Polne-Fuller;A.Gibor https://doi.org/10.1007/BF00693055
  5. Algae v.16 Taxonomy of the genus Porphyra(Bangiales, Rhodophyta) from Korea Hwang,M.S.;I.K.Lee
  6. Trends Biochem Sci v.23 Multiple sequence alignment with Clustal X. Jaennmougin,F.;J.D. Thompson;M.Gouy;D.G.Higgins;T.J.Gibson https://doi.org/10.1016/S0968-0004(98)01285-7
  7. Korean Fisheries Yearbook Korea Fisheries Association
  8. J.Appl.Phycol. v.11 Discrimination of Porphyra species based on small subunit ribosomal RNA gene sequence Kunimoto,M.;H.Kito,Y.Yamamoto;D.P.Cheney;Y.Kaminishi;Y.Mizukami https://doi.org/10.1023/A:1008019409008
  9. EMBNEW News v.4 GeneDoc:Analysis and visualization of genetic varivation Nicholats,K.B.;H.B.Nicholas Jr;D.W.Deerfield
  10. J.Mar.Biotechnol v.6 RAPD identification of genetic variation in the seaweed Hizikia fusiformis Park,J.W.;Y.C.Cho;B.H.Nam;H.J.Jin;C.H.Sohn;Y.K.Hong
  11. Molecular cloning:A laboratory manual(2nd eds.) Sambrook,J.;E.F.Fritsch;T,Maniatis
  12. J.Phycol. v.29 Molecular analysis reveals crytic diversity in Prophyra(Rhodophyta) Stiler,J.W.;J.R.Waa;amd https://doi.org/10.1111/j.1529-8817.1993.tb00152.x
  13. PCR protocols: A guids to methods and applications Amplification and direct seqeuncing of fungal ribosomal RNA genes for phylogenetics White,T.J.;T.Bruns;S.Lee;J.Taylor;Innis,M.;J.Gelfand(eds.);J.Sninsky(eds.);T.White(eds.)

피인용 문헌

  1. Composition of Amino Acid and Photosynthesis Pigment on Growing Season of Pyropia dentata (Rhodophyta) in Haenam, Korea vol.30, pp.4, 2018, https://doi.org/10.13000/JFMSE.2018.08.30.4.1248