DOI QR코드

DOI QR Code

Effect of Neighbor Base Sequences on the Base Pair Stabilities at d(CXG) and d(GXC) in Human ε-globin Promoter

사람의 ε-글로빈 프로모트에서 d(CXG)와 d(GXC)의 안정성에 인접한 염기 서열들의 영향 에 관한 연구

  • Published : 2002.04.01

Abstract

Human $\varepsilon$-globin DNA fragment was used to determine the thermal stabilities of base pairs at d(CXG) and d(GXC) by Temperature Gradient Gel Electrophoresis(TGGE). The base pair stability depends on the hydrogen bonding interaction and base stacking interaction of neighbor base sequence. The orders of base pair stabilities were T.AG.A = A.G>C.T>T.C>C.A>A.C for d(GXC).d(GYC).

온도 기울기 전기영동장치를 이용하여 d(CXG)와 d(GXC) 염기의 열 안정성을 결정하는데 사람의 $\varepsilon$-글로빈 DNA조각을 사용하였다. 염기 쌍의 안정성은 이웃하는 염기서열에 의한 수소결합과 base stocking 상호작용에 의존한다. 염기 쌍의 안정성은 d(CXG) d(CYG)의 경우에 T.AG.A = A.G>C.T>T.C>C.A>A.C이다.

Keywords

References

  1. Proc. Natl. Acad. Sci. USA v.88 Constant denaturant gel electrophoresis as a rapid screening technique for p53 mutations Borresen A. L.;E. Hovig;B. Smith-Sorensen;D. Malkin;S. Lystad;T. I. Andersen;J. M. Nesland;K. J. Isselbacher;S. H. Friend https://doi.org/10.1073/pnas.88.19.8405
  2. Nucleic Acids Research v.22 A program for selecting DNA fragments to detect mutations by denaturing gel electrophoresis methods Brossette;S.;R. M. Wartell. https://doi.org/10.1093/nar/22.20.4321
  3. Cancer Res. v.49 Loss of heterozygosity for loci on chromosome 17p in human malignant astrocytoma Fults;D.;R. H. Tippets;G. A. Thomas;Y. Nakamura;R. White.
  4. Cancer Res v.49 Replication of the lagging strand: a concetr of at least 23 polypeptides Hubscher;U.;Y.-S. Seo
  5. Environmental Mutagenes & Carcinogen v.18 Detection of mutated DNA fragment by the heteroduplex analysis at the temperature gradient gel Jo;Y.-S.;M.-J. Goo;G.-G. Park;Y.-S. Park;J. B. Gang.
  6. Nucleic Acids Research v.21 Influence of nearest neighbor sequence on the stability of base pair mis-matches in long DNA: determination by temperature gradient gel electrophoresis Ke S.-H.;R. M. Wartell.
  7. Annu. Rev. Biochem. v.56 DNA mismatch correction Modrich;P. https://doi.org/10.1146/annurev.bi.56.070187.002251
  8. Gene v.123 CACC box and enhancer reponse of the human embryonic epsilon globin promoter Motamed;K.;C. Bastiani;Q. Zhang;A. Bailey;C.-K. Shen. https://doi.org/10.1016/0378-1119(93)90129-Q
  9. Nucleic Acids Research v.13 Nearly all single base substitutions in DNA fragments joinde to a GC-clamp can be detected by denaturing gradient gel electrophoresis Myers;R. M.;S. G. Fischer;L. S. Lermana;T. Maniatis https://doi.org/10.1093/nar/13.9.3131
  10. Oncogene v.5 Allele loss from chromosome 17 in ovarian cancer Russell;S. E.;G. I. Hickey;W. S. Lowry;P. White;R. J. Atkinson
  11. Cancer Res v.50 Allelotype of breast cancer: cumulative allele losses promote tumor progression in primary breast cancer Sato T.;A. Tanigami;K. Yamakawa;F. Akiyama;F. Kasumi;G. Sakamoto;Y. Makamura
  12. Proc. Natl. Acad. Sci. USA v.86 Attachment of a 40-base-pair G+C-rich sequence(GC-clamp) to genomic DNA fragements by the polymerase chain reaction results in improved detection of single-base change Sheffield;V. C.;D. R. Cox;L. S. Lerman;R. Myers https://doi.org/10.1073/pnas.86.1.232
  13. Biochem J. v.197 Denaturation of proteins and nucleic acids by thermal-gradient electrophoresis Thatcher;D. R.;B. Hodson https://doi.org/10.1042/bj1970105