Cloning and Sequenece Analysis of the hpa D Gene Responsible for Homoprotocatechuate 2, 3-Dioxgenae from Pseudomonas sp. DJ-12

  • Published : 2001.12.01

Abstract

The degradative pathway of homoprotocatechuate (HPC) is the bacterial routhe wherby 3,4-dihydrox-yphenylactic acid is catabolized to pyruvate and succinate by a series of sequential reactions . The HPC is catalzed by homoprotocatechuate 2, 3-dioxygenase(HPC-2,3O) to from 5-carboxymethy1-2-hydroxy-muco semialdehyde. In this study, the hha D gene encoding. HPC, 2, 3O was Cloned from the chromo-somal DNA of Pseudomonas sp. DJ-12 and its nucleotide sequence was analyzed. The open reding frame of hpaD gene was found to be composed of 864 nucleotide pairs and to encode a poypetide with 287 amino acide residues. The deduced amino acid sequence of the HPC-2,3O from Pseudomonas. sp. DJ-12 exhibited 60~64% homology with those of the corresponding enzymes from E. coli. Salmonella enterica, and Klebsiella pneumoniae.

Keywords

References

  1. J. Biol. Chem. v.269 Mechanism of p-hydroxyphenylacetate-3-hydroxylase Arunachalam U.;V. Massey;S.M. Miller
  2. Nucleic Acids Res. v.25 Gapped BLAST and PSIBLAST: a new generation of protein database search programs Altschul S.F.;T.L. Madden;A.A. Schaffer;J. Zhang;Z. Zhang;W. Miller;D.J. Lipman
  3. J. Microbiol. v.35 Dechlorination of 4-chlorobenzoate by Pseudomonas sp. DJ-12 Chae J.C.;C.K. Kim
  4. Gene v.258 Genetic structure and functional implication of the febgene cluster for hydrolytic dechlorination of 4-chlorobenzoate from Pseudomonas sp. DJ-12 Chae J.C.;Y.S. Kim;Y.C. Kim;G.J. Zylstra;C.K. Kim
  5. Appl. Environ. Microbiol. v.61 Polymer production by Klebsiella pnumoniae 4-hydroxyphenylacetic acid hydroxypase gense cloned in Escherichia coli Gibello A.;E. Ferrer;J. Sanz;M. Martin
  6. J. Bacterol. v.170 Molecular cloning, expression, and analysis of the genes of the homoprotocatechuate catabolic pathway of Escherichia coli C. Jenkins J.R.;R.A. Cooper
  7. Microbiology v.20 Anaerobic oxidation of phenylacetate and 4-hydroxyphenylacetate, to benzoyl-coenzyme A and CO₂in denitrifying Pseudomonas sp. Mohanmed M.E.;B. Seyfried;A. Tschech;G. Fuchs
  8. J. Biol. Chem. v.271 Homoprotocatechuate 2,3-dioxygenase from Brevibacterium fuscum Miller M.A.;J.D. Lipscomb
  9. Gene v.187 The bpcDEF meta-cleavage pathway genes involved in biphenyl/polychlorinated biphenyl degradation are located on a linear plasmid and separated from the initial bph ACB genes in Rhodococcus sp. strain RHAI1 Masai E.;K. Sugiyama;N. Iwashita;S. Shimizu;J.E. Hauschild;T. Hatta;K. Kimbara;K. Yano;M. Fukuda
  10. J. Bacteriol. v.175 Characterization of an Escherichicl coli aromatic hydroxylase with a broad substrate range Prieto M.A.;A.P. Aranoa;J.L. Garcia
  11. J. Bacteriol. v.178 Molecular characterization of the 4-hydroxyphenylacetate catabolic pathway of Escherichia coli W: Engineering a mobile aromatic degradative cluster Prieto M.A.;E. Diaz;J.L. Garcia
  12. FEBS Letters v.414 Identification of the 4-hydroxyphenylacetate transport gene of Escherichia coli W: consturction of a highly sensitive celloular brosensor Prieto M.A.;J.L. Garcia
  13. Biochem. Biophys. Res. Comm. v.232 Identification of a novel positive regulator of the 4-hydroxyphenylacetate catabolic pathway of Escherichia coli Prieto M.A.;J.L. Garcia
  14. Gene v.156 Sequence of the hpcC and hpcG genes of the meta-fission homoprotechuic and pathway of Escherichia coli C: nearly 40% amino-acid identity with the analogous of the catechol pathway Roper D.I.;J.M. Stringfellow;R.A. Cooper
  15. FEBS Letters v.266 Purification, some properties and nucleotide sequence of 5-carboxmethyl-2-hydroxymuconate isomerase of Escherichia coli C. Roper D.I.;R.A. Cooper
  16. FEBS Letters v.275 Subcloning and nucleotide suquence of the 3,4-dihydroxyphenylacetate (homoprotocate-chuate) 2,3-dioxygenase gene from Escherichia coli C. Roper D.I.;R.A. Cooper
  17. Gene v.166 Sequence of the Escherichia coli C homoprotocatechuic acid degradative operon completed with that of the 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase-encoding gene (hpcH) Stringfellow J.M.;B. Turpin;R.A. Cooper
  18. Molecular cloning: A Laboratory Manual(2nd ed.) Sambrook J.;E.F. Fritsch;T. Maniatis
  19. Modern soil microbiology Pesticides: Microbial degradation and effects on microorganisms Vallaeys T.;G. Soulas;J.D.V. Elsas(ed.)
  20. Kor. J. Microbiol. v.30 Divergence of the cbp genes in 4-chlorbiphenyl catabolizing bacteria Youn D.J.;J.J. Han;C.K. Kim;Y. Kim