Analysis of ITS Nucleotide Sequences in Ribosomal DNA of Morus Species

뽕나무속 식물의 ITS 영역 염기서열 분석

  • 성규병 (농업과학기술원 잠사곤충부) ;
  • 류근섭 (경북대학교 농과대학) ;
  • 김호락 (농업과학기술원 잠사곤충부) ;
  • 남학우 (농업과학기술원 잠사곤충부) ;
  • 구태원 (농업과학기술원 잠사곤충부)
  • Published : 2001.06.01

Abstract

Nucleotide sequence in internal transcribed spacer (ITS) regions of ribosomal DNA among mulberry varieties (Morus species) were analyzed in order to identify the possibility of classification for the species. The variations in the ITS regions were compared among 9 mulberry varieties and one variety of Cudrania species as an outgroup. ITS 1 region of the varieties ranging from 219 to 220 bp in length was 49-50 bp shorter than ITS 2 region. Of 510 sites in the ITS 1 and 2 regions, 148 sites were potentially variable, of which 52% and 48% sites were distributed in ITS 1 and ITS 2 regions, respectively. By pairwise comparisons on the nucleotide sequences in the ITS 1 and 2 regions among 9 mulberry varieties, they were classified into 5 groups. Divergence values of the sequences, however, were considerably low ranging from 0 to 1.3%. Especially, there was no divergence among Backasipmunja, Chungilppong and Milsungpong and Jungyasang, Ssarigol II and Yulbon, respectively.

Keywords

References

  1. Am. J. Bot. v.86 no.4 Phylogenetic relationships in Lupinus (Fabaceae:Papilionoideae) based on internal transcribed spacer sequences (ITS) of nuclear ribosomal DNA. Ainouche A. K.;R. J. Bayer
  2. Mycologya. v.84 no.4 Molecular phylogeny of northern hemisphere species of Armillaria. Anderson, J. B.,;E. S. Stasobski
  3. Mol. Phylogent. Evol. v.13 no.1 Potential phylogenetic utility of the low-copy nuclear gene Pistillata in Dicotyledonous plants: Comparison to nrDNA ITS and trnL intron in Sphaerocar damum and other Brassicaceae Baily, D. C.;J. J. Doyle
  4. Molec. Phylogent. Evol. v.1 Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants : An example form the Compositae Baldwin, B. G.
  5. Ann. Missouri Bot. Gard. v.82 The ITS region of nuclear ribosmal DNA: A valuable source of evidence of angiosperm phylogeny Baldwin, B. G., M. J. Sanderson, J. M. Porter M. F. Workciechowski, C. S. Campbell;M. J. Donoghue
  6. Mol. Phylogent. Evol. v.14 no.3 Phylogeny of Taxaceae and Cephalotaxaceae genera in inferred from Chloroplast matK gene and nuclear rDNA ITS region Cheng, Y., R. G Nicolson, Kim Tripp;S. M. Chaw
  7. Kor. J. Plant Tax. v.46 no.4 단풍나무속 일부 종의 ITS 염기서열과 계통학적 고찰 조혜정, 김상태, 서영배, 박종욱
  8. Amer. J. Bot. v.83 A molecular phylogeny of Apiaceae subfamily Apioideae : Evidence from nuclear ribosomal DNA internal transcribed spacer sequences. Downie, S. R.;D. S. Katz-Downie
  9. Evolution v.39 Confidence limits on phylogenies: An approch using bootstrap Felsentein, J.
  10. University of Wahington. Seatle. PHYLIP(Phylogeny Inference Package) version 3.5 Department of Genetics. Felsentein, J.
  11. 蠶絲硏究 v.98 クワ科植物におけるバ-オキシダ-ゼアイザイムバタ-ンの種屬間差異 平野 久, 中島建次
  12. 蠶試報 v.28 クワのタンパク質變異に關する 育種學的硏究 平野 久
  13. 農學大系作物部門 桑編 堀田禎吉
  14. Proc. Natl. Acad. Sci. v.96 no.20 Ecosystem rooting depth deternined with caves and DNA Jackson, R. B., Moore, L. A., Hoffmann, W. A., Pockman, W. T.;Linder, C. R.
  15. J. Sericult. Sci. Japan. v.40 no.4 Shape of idioblasts in mulberry leaves with special reference to the classification of mulberry trees. Katsumata
  16. Pl. Syst. Evol. v.190 Comparisons of phylogenetic hypotheses among different data sets in dwarf dandelions(Krigia): Additional information fromimternal transcribed spacer sequences of nuclear ribosomal DNA Kim, K. J.;R. K. Jansen
  17. 裁桑學 金文浹
  18. J. Molec. Evol. v.16 A simple method for estmating evolutionary rates of base substitutions through comparable studies of nucleotide sequences Kimura, M.
  19. Nucl. Acids. Res. v.16 Nucleotide sequence of 17S-25S spacer from tomato rDNA Kiss, T., M. Kis, S. Agel;F. Solymosy
  20. 蠶試報 v.3 桑屬植物考 小泉源一
  21. Am. J. Bot. v.86 no.7 Phylogenetic relationships of the Hamamelidaceae nferred fromsequences of internal transcribed spacers(ITS) of nuclear ribosomal DNA Linnaeus, C, Species Plantarum, Stockholm. Li, J., A. L. Bogle;A. Klein
  22. Syst. Bot. v.21 Length variation in the nuclear ribosomal DNA internal transcribed spacer region of non-flowering seed plants Liston, A., Robinson, W. A.,;Oliphant, J. M.
  23. Molec. Biol. Evol. v.4 The neighbor-joining method: A new method for reconstructing phylogenetic tress Saitou, N.;M. Nei
  24. Central Sericultural Research and Training Institutem Geographical distribution and explortion of the genus Morus L.(Moraceae).In Genetic resources of mulberry and utilization Sanjappa M, Sengupta K., Dandin S. B,(eds)
  25. Biochem. Syst. Ecol. v.26 Phylogeny of the Hamamelidaceae based on the ITS sequences of nuclear ribosomal DNA. Shi, S., H. T. Chang, Y. Chen, L. Qu, J. Wen
  26. Am. J. Bot. v.86 no.4 The phylogenetic position of Carex section Phyllostachys and its impaications for phylogeny and subgeneric circumscription in Carex(Cpperaceae) Starr, J. R., R. J. Bayer,;B. A. Ford
  27. Nucl. Acids. Res. v.20 Nucleotide sequenes of internal transcribed spacers and 5.8S rRNA gene in Canella winterana(Magnolaiales: Canellaceae) Suh, Y., L., B. Thien;E. A. Zimmer
  28. Amer. J. Bot. v.80 Molecular evolution and phylogenetic implication of internal trascribed spacer sequences of ribosomal DNA in Winteraceae Suh, Y., L., B. Thien, H. E. Reeve;E. A. Zimmer
  29. version 4. Sinauer. PAUP: Phylogeneic analysis using parsimony (*and other methods) Swofford, D. L.
  30. Pl. Molec. Biol. v.4 Nucleotide sequence of the 17S-25S spaer region from rice rDNA Takaiwa, F., K. Oono;M. Sugiura
  31. Nucleic Acids Research. v.24 The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin,;D. G. Higgins
  32. Academic Press. Amplification and direct sequencing of fungla ribosomal RNA genes for phylogenetics. In PCR Protocols: A guie to methods and application White, T. J., T. Bruns, S. Lee;J. Taylor, Innis M, S, Gelfand, J. Sninsky;T. White(eds)
  33. Amer. J. Bot. v.80 Monophyly of aneuploid Astagalus (Fabaceae) Evidence from nuclear ribosomal DNA internal transcribed spacer sequences. Wojciechowski, M. F., M. J. Sanderson, B, G. Baldwin;M. J. Domoghue