Phylogenetic Analysis of the Genus Dendronephthya (Nephtheidae, Alcyonacea) Based on Internal Transcribed Spacer Sequences of Nuclear rDNA

  • Lee, Young-Ja (Department of Biological Science, College of Natural Sciences, Ewha Womans University) ;
  • Song, Jun-Im (Department of Biological Science, College of Natural Sciences, Ewha Womans University)
  • Published : 2000.12.01

Abstract

Species boundaries among the Alcyonacean soft coral, the genus Dendronephthya, are often obscured by inter- and intraspecific morphological variations. In the present study, we attempted to infer the genetic relationships of eight dendronephthians based on their molecular characters, the internal transcribed spacer (ITS) regions of ribosomal DNA, and then compared this result together with the random amplified polymorphic DNA (RAPD) data from our previous investigation. Dendronephthya. putteri and D. suensoni formed a divaricate form - VI grade specific clade, whereas D. castanea, D. gigantea, D. aurea and D. spinifera, formed a umbellate and glomerate form - IV and III grade specific clade. Therefore, we confirmed that the main characters the growth form and the anthocodial grade and formula, are important in identification of the species in dendronephthians despite some problems. Also, the relationships of the growth form are clarified as the glomerate form is much closer to the umbellate form than to the divaricate form based on two sets of independent molecular data. However, we cannot determine the molecular markers which limit the species boundaries among this genus with ITS sequences.

Keywords

References

  1. Bruno JF and Edmunds PJ (1997) Clonal variation for phenotypic plasticity in the coral Madracis mirabilis. Ecology 78: 2177-2190 https://doi.org/10.1890/0012-9658(1997)078[2177:CVFPPI]2.0.CO;2
  2. Cerbah M, Souza-Chies T, Jubier MF, Lejeune B, and Siljak-Yakovlev S (1998) Molecular phylogeny of the genus Hypochaeris using internal transcribed spacers of nuclear rDNA: inference for chromosomal evolution. Mol Biol Evol 15: 345-354
  3. Chen CA and Miller DJ (1996) Analysis of ribosomal ITS1 sequences indicates a deep divergence between Rhodactis (Cnidaria : Anthozoa : Corallimorpharia ) species from the Caribbean and the Indo-Pacific/Red sea. Mar Biol 126: 423-432 https://doi.org/10.1007/BF00354624
  4. Chen CA, Odorico DM, Ten Lohuis M, Verson JEN, and Miller DJ (1995) Systematic relationships within the Anthozoa (Cnidaria: Anthozoa) using the 5'-end of the 28S rDNA. Mol Phy Evol 4: 175-183 https://doi.org/10.1006/mpev.1995.1017
  5. Chen CA, Willis BL, and Miller DJ (1996) Systematic relationships between tropical Corallinorpharians (Cnidaria : Anthozoa : Corallimorpharia ): utility of the 5.8S and internal transcribed spacer (ITS) regions of the rRNA transcription unit. Bull Mar Sci 59: 196-208
  6. Coffroth MA (1997) Molecular approaches to the study of clonal organisms : deciphering the alphabet soup. Proc 8th Coral Reef Sym 2: 1603-1608
  7. Felsenstein J (1994) PHYLIP (Phylogeny Inference Package)(Version 3.54), Manual. The University of Washington, Seattle
  8. Hunter CL, Morden CW, and Smith CM (1997) The utility of ITS sequences in assessing relationships among zooxanthellae and corals. Proc 8th Int Coral Reef Sym 2: 1599-1602
  9. Je JG (1994) The distribution of benthic animals on the rocky shore of Munsom area, Chejudo, Report on 93' Natural Ecosystem of Coral Area, pp. 241-259
  10. Knowlton N (1993) Sibling species in the sea. Annu Rew Ecol Syst 24: 189-216 https://doi.org/10.1146/annurev.es.24.110193.001201
  11. Kukenthal W (1905) Versuch einer Revision der Alcyonarian. II, Die Familie der Nephthyiden. 2, Teil. Die Gattungen Dendronephthya n. g. und Stereonephthya n. g. Zool J Harb Aby Syst 15: 635-662
  12. Kukenthal W (1906) Japanische Alcyonacean. Abh. d. II. Kl. d. K. Ak. d. Wiss. Suppl. Bd.Abt. Munchen. pp. 1-86
  13. Leignel V, Humbert JF, and Elard L (1997) Study by ribosomal DNA ITS2 sequencing and RAPD analysis on the systematics of four Metastrongylus species (Nematoda: Metastrongyloidea). J Parasitol 83: 606-611 https://doi.org/10.2307/3284232
  14. McFadden CS (1999) Genetic and taxonomic relationships among northeastern Atlantic and Mediterranean populations of the soft coral Alcyonium coralloides. Mar Biol 133: 171-184 https://doi.org/10.1007/s002270050456
  15. McFadden CS, Donahue R, Hadland BK, and Weston R (2001) A molecular phylogenetic analysis of reproductive trait evolution in the soft coral genus Alcyonium, Evolution: in press
  16. Odorico DM and Miller DJ (1997a) Variation in the ribosomal internal transcribed spacer and 5.8S rDNA among five species of Acropora (Cnidaria: Scleractinia): patterns of variation consistent with reticulate evolution. Mol Biol Evol 14: 465-473
  17. Odorico DN and Miller DJ (1997b) Internal and external relationships of the Cnidaria: implications of primary and predicted secondary structure of 5'-end of the 23S-like rDNA. Proc R Soc Lond B 264: 77-82 https://doi.org/10.1098/rspb.1997.0011
  18. Palumbi SR (1994) Genetic divergence, reproductive isolation and marine speciation. Annu Rew Ecol Syst 25: 547-572 https://doi.org/10.1146/annurev.es.25.110194.002555
  19. Raahauge P and Kristensen TK (2000) A comparison of Bulinus africanus group species (Planorbidae: Gastropoda) by use of the internal transcribed spacer 1 region combined by morphological and anatomical characters. Acta Tropica 75: 85-94 https://doi.org/10.1016/S0001-706X(99)00086-8
  20. Reed KM, Hackett JD, and Phillips RB (2000) Comparative analysis of intra-individual and inter-species DNA sequence variation in salmonid ribosomal DNA cistrons. Gene 249: 115-125 https://doi.org/10.1016/S0378-1119(00)00156-6
  21. Roxas HA (1933) Philippine Alcyonacea. II. The families Alcyoniidae and Nephthydae. Philippine J Sci 50: 345-470
  22. Sambrook J, Fritsch EF, and Maniatis T (1989) Molecular Cloning: a Laboratory manual, 2nd Ed. Cold Spring Harbor Laboratory Press, New York, 1.1-18.85
  23. Sherriffs WR (1922) Evolution within the genus Dendronephthya (Spongodes) (Alcyonaria), with descriptions of a number of species. Proc Zool Sco 3: 33-77
  24. Song JI (1977) A study on the classification of Korea Anthozoa. 2. Alcyonacea. Korean J Zool 19: 51-60
  25. Song JI and Lee YJ (2000) Systematic relationships within the genus Dendronephthya (Alcyonacea: Octocorallia: Anthozoa) based on RAPD Analysis. Korean J Biol Sci 4: 1-7
  26. Song JI and Won JH (1997) Systematic relationship of the anthozoan orders based on the partial nuclear 18S rDNA sequences. Korean J Biol Sci 1: 43-52
  27. Swofford DL (1993) PAUP: Phylogenetic Analysis Using Parsimony. Version 3.1.1, Illinois Natural History Survey, Chicago
  28. Thomson JA and Dean LMI (1931) The Alcyonacea of the Siboga Expedition. Siboga Expeditie, Monaco., pp. 1-227
  29. Tompson JD, Higgins DG, and Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequencing weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680 https://doi.org/10.1093/nar/22.22.4673
  30. Utinomi H (1952) Dendronephthya of Japan. I. Dendronephthya collected chiefly along the coast of Kii Peninsula. Publ Seto Mar Biol Lab 2: 161-212
  31. Utinomi H (1954) Dendronephthya of Japan. II. New species and new records of Dendronephthya and the allied Steronephthya from Kii region. Publ Seto Mar Bio Lab 3: 319-329