Genetic Analysis of Somaclones Derived from Different Cytotype Plants of Scilla scilloides Complex using RAPD

PCR-RAPD 기법을 이용한 세포 유형이 다른 무릇 (Scilla scilloides Complex) 체세포클론의 유전적 분석

  • 오정순 (충남대학교 자연과학대학 생물학과) ;
  • 방재욱 (충남대학교 자연과학대학 생물학과)
  • Published : 1999.10.01

Abstract

The usefulness of randomly amplified polymorphic DNA (RAPD) was evaluated to access the genetic variation in somaclones derived from different cytotype plants of Scilla scilloides Complex, AA (2n=16), BB (2n=18) and AABB (2n=34). Three arbitrary decamer primers were successfully used to amplify genomic DNA from the somaclones. DNA polymorphism was observed between cytotypes. The total number of bands in AA, BB and AABB somaclones were 110, 116 and 103, and marker bands examined were 15, 19 and 26, respectively. The diversity of types using PCR in AA, AABB and BB somaclones were 39.2%, 72.3% and 45.7%, respectively. RAPD band patterns suggest that type AA is more stable than type BB and AABB. The frequencies of specific band in AA, BB or AABB somaclones were 0.9%, 4.3% and 4.9%, respectively. The applicability and reliability of RAPD markers for evaluating the somaclones are discussed.

무릇 (S. scilloides Complex)에서 게놈 유형이 다른 AA, BB 및 AABB 게놈 식물의 조직배양을 통하여 유도된 재분화체를 대상으로 RAPD기법을 이용한 유전적 분석을 통해 게놈의 안정성과 게놈 유형에 따른 차이를 분석한 결과, 적용한 20가지의 primer중 Al, A2및 A3에서 게놈 유형에 따른 다형현상을 관찰할 수 있었다. RAPD분석 결과 AA게놈에서 39.2%로 다형성이 세 가지 유형 중 가장 낮게 나타났으며, BB 게놈에서는 72.3%로 가장 높은 다형성을 보였고, AABB 게놈에서는 45.7%의 다형성이 관찰되었다. AA유형에서 관찰된 총 110개의 밴드 중 특이 밴드가 A3에서 하나 나타나 0.9%의 변이율을 보였으며, BB 게놈의 경우 총 116개의 밴드 중 특이 밴드는 A3에서 5개 나타나 4.3%의 변이율을 보여 주었고, AABB유형에서는 총 103개의 밴드 중 특이 밴드가 Al에서 2개, A2에서 1개, A3에서 2개로 총 5개가 나타나 4.9%의 변이율을 나타내었다. RAPD 분석은 게놈 유형이 다른 무릇 체세포클론의 유전적인 안정성 분석에 유용하게 이용될 수 있다.

Keywords

References

  1. Jap J Genet v.47 Cytogenetic study of Scilla scilloides complex from Korea Araki H
  2. Genetica v.66 Th distribution of diploids and polyploids of the Scilla scilloides Complex from Korea Araki H
  3. Can J PI Sci v.56 Barely cultier identification by use of isozyme electrophoretic patterns Bassiri A
  4. Kor J Plant Tissue Cul v.21 Chromosome variation in callus cells derived from differnet cytogenetic type plants of Scilla scilloides Complex Bang JW;Park JH;Choi EY
  5. Theor Appl Genet v.67 Restriction fragment length polymorphisms in genetic improvement : Methodologies, mapping and costs Beckman JS;Soller M
  6. Kor J Plant Tissue Cul v.24 Totipotential, morphological, biochemical comparisons between nonxmbryogenic callus and embryogenic callus in water dropwort (Oenanthe stolonifera DC) Been CG;Kim BD
  7. Theor Appl Genet v.202 Molecular analysis of somaclonal mutant of maize alcohol dehydrogenase Brettell RIS;Dennis ES;Scowcroft WR;Peacock WJ
  8. Mol Gen Genet v.273 Analysis of single protoplasts and regenerated plants by PCR and RAPD technology Brown PT;Lange FD;Kranz E;Hamburg FRG
  9. Heredity v.69 Detection of genetic variation between and within populations of Gliricidia epium and G. caculata using RAPD markers Chalmers KJ;Waugh R;Sprent JI;Simons AJ;Powell W
  10. Ph.D. Thesis Cytogenetic diversity in Scilla scilloides Complex from Korean natural populations and chromosome stability in somachlones Choi HW
  11. Plant Cell Rep v.15 Genetic diversity of potato determined by random amplified polymorphic DNA analysis Demeke T;Lynch DR;Kawchuk LM;Kozub GC;Armstrong JD
  12. Trends in Genet v.5 Somaclonal variation: Genetic basis and breeding application Evans DA
  13. Biotechniques v.13 A quick and inexpensive method of removing polysaccharides from plant geomic DNA Fang G;Hammar S;Grumet R
  14. Theor Appl Genet v.72 Improvements in regeneration from protoplasts of potato and studies on chromosome stability. 1. The effect of initial culture media Fish N;Karp A
  15. Plant Cell Rep v.12 RAPD markers for constructing intraspeccific tomato genetic maps Foolad MR;Jones RA;Rodriguez RL
  16. Theor Appl Genet v.86 RAPDs as an aid to evaluate the genetic integrity of somatic embryogenesis-derived populations of Picea mariana (Mill) Isabel N;Tremblay L;Michaud M;Tremblay FM;Bousquet J
  17. Plant Cell Rep v.8 Somaclonal variation of Lolium multiflorum L. and L. temulentum Jackson JA;Jones MGK
  18. Oxford Surveys of Plant Molecular and Cellular Biology v.2 On the current understanding of somaclonal variation. In:Miflin BJ (ed) Karp A
  19. Ph.D Thesis, Chungnam National University Molecular-cytogentic analysis and establishment of a regeneration system in Gentiana scabra var Lee MK
  20. Kor J Plant Tiss Cult v.24 Protoclonal variation in cabbage (Brassica oleracea spp. capitata) Lee YH;Cho HS;Kim HI;Na JH;Lee YW
  21. Plant Cell Rep v.15 The detection of somaclonal variants of beet using RAPD Munthali MT;Newbury HJ;Ford-Lloyd BV
  22. Rep Scientific Res Funded by Mini of Education of Japan Relationship between chromosome constitution of 3 species of Liliaceae and human activities Noda S;Lee HS
  23. Crop Sci v.21 Variability of protoplast-derived potato clones Secor G;Shepard GF
  24. Plant Cell Rep v.12 Genetic variation in monoploids of diploid potatos and detection of clone-specific random amplidified polymorphic DAN markers Singsit C;Ozias-Akins P
  25. Plant Cell Rep v.13 RAPD markers for confirmation of somatic hybrids in the dihaploid breeding of potato (Dolanum tuberowum L.) Takemori N;Shinoda K;Kadotani N
  26. Plant Cell Rep v.11 The use of RAPD markers for the detection of gene introgression in potato Waugh R;Baird EX;Powell W
  27. Theor Appl Genet v.86 Rendom amplified polymorphic DNA (RAPD) markers for genetic analysis in Allium Wilkie SE;Isaac PG;Slater RJ
  28. Nucleic Acids Res v.18 DNA polymorphisms amplified by arbitrary primers are useful as genetic markers Williams JGK;Kubelik AR;Livak KJ;Rafalski JA;Tingey SV
  29. Plant Cell Rep v.12 Use of RAPD markers to screen somatic hybrids between Solanum tuberosum and S. brevidens Xu YS;Clark MS;Pehu E
  30. Theor Appl Genet v.86 Identification and classification of celery cultivars with RAPD markers Yang X;Quiros C
  31. Bot Mag Tokyo v.104 The distribution of diploids and polyploids of the Scilla scilloides Complex in the northeastern district of China Yu Z;Araki H