Proceedings of the Microbiological Society of Korea Conference (한국미생물학회:학술대회논문집)

The Microbiological Society of Korea (한국미생물학회)
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A genomice Tool for Microbial Genome Comparison Using BLAST/FASTA

BLAST/FASTA를 활용한 미생물 유전체 비교용 도구의 개발

  • Tae Hongseok (Information and Technology institute, SmallSoft Co., Ltd.) ;
  • Park Kiejung (Information and Technology institute, SmallSoft Co., Ltd.)
  • 태홍석 ((주)스몰소프트 정보기술연구소) ;
  • 박기정 ((주)스몰소프트 정보기술연구소)
  • Published : 2002.10.01
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Abstract

We have developed GComp as an analysis tool for comparative analysis of microbial genomes. Thetool uses BLAST or FASTA as a preprocessing program for local alignments, parses the homology search results, and generates tables and files to show homology relationship between two genomes at a glance. The interface for graphical representation of the comparative genomic analysis has been also implemented. Through analysis of a few pairs of microbial genome sequences, the program has been proved to be practically useful and a few additional features have been devised and designed, which will be added in the further development.

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